mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,820,529 | 2 | .→T | 1.2% | 1.7 0.0 ‑0.1 | 173 | coding (642/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| * | NC_000913 | 4,042,699 | 1 | .→T | 1.0% | 1.6 0.0 ‑0.3 | 194 | coding (285/987 nt) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein |
| * | NC_000913 | 4,183,965 | 1 | .→G | 1.1% | 1.6 0.0 ‑0.1 | 181 | coding (2721/4029 nt) | rpoB | RNA polymerase, beta subunit |
| * | NC_000913 | 4,183,965 | 2 | .→A | 1.1% | 1.6 0.0 ‑0.2 | 181 | coding (2721/4029 nt) | rpoB | RNA polymerase, beta subunit |
| * | NC_000913 | 4,296,599 | 1 | .→A | 1.2% | 1.5 0.0 ‑0.2 | 171 | coding (527/690 nt) | yjcO | Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,147,986 | 1 | .→G | 1.2% | 1.3 0.0 ‑0.2 | 170 | coding (90/1041 nt) | gpr | L‑glyceraldehyde 3‑phosphate reductase |
| * | NC_000913 | 851,826 | 1 | .→A | 1.2% | 1.2 0.0 ‑0.1 | 173 | coding (772/1584 nt) | opgE | OPG biosynthetic transmembrane phosphoethanolamine transferase |
| * | NC_000913 | 1,469,584 | 0 | G→A | 100.0% | 1.2 | 1 | S76N (AGC→AAC) | insI1 | IS30 transposase |
| * | NC_000913 | 3,206,123 | 1 | .→C | 1.1% | 1.2 0.0 ‑0.1 | 174 | coding (134/933 nt) | ttdR | transcriptional activator of ttdABT |
| * | NC_000913 | 3,936,864 | 1 | .→C | 1.1% | 1.2 0.0 ‑0.2 | 177 | coding (587/891 nt) | rbsB | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
| * | NC_000913 | 4,038,121 | 0 | A→G | 100.0% | 1.2 | 1 | noncoding (603/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,080,360 | 1 | .→C | 1.2% | 1.2 0.0 ‑0.2 | 169 | coding (869/930 nt) | fdhE | formate dehydrogenase formation protein |
| * | NC_000913 | 4,106,116 | 1 | .→G | 1.0% | 1.1 0.0 ‑0.2 | 203 | coding (297/501 nt) | cpxP | inhibitor of the cpx response; periplasmic adaptor protein |
| * | NC_000913 | 4,489,901 | 1 | .→C | 1.1% | 1.0 0.0 ‑0.1 | 180 | coding (163/1503 nt) | yjgR | DUF853 family protein with NTPase fold |
| * | NC_000913 | 3,365,846 | 0 | A→T | 100.0% | 0.9 | 1 | F291L (TTT→TTA) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,820,529 | 1 | .→G | 1.2% | 0.8 0.0 ‑0.1 | 173 | coding (642/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| * | NC_000913 | 3,620,791 | 0 | A→G | 100.0% | 0.7 | 2 | S534G (AGC→GGC) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 3,920,581 | 1 | .→C | 1.1% | 0.7 0.0 ‑0.1 | 187 | coding (308/471 nt) | atpF | F0 sector of membrane‑bound ATP synthase, subunit b |
| * | NC_000913 | 4,102,632 | 1 | .→C | 1.2% | 0.6 0.0 ‑0.0 | 172 | coding (943/984 nt) | kdgT | 2‑keto‑3‑deoxy‑D‑gluconate transporter |
| * | NC_000913 | 3,619,553 | 0 | T→A | 100.0% | 0.5 | 1 | L121Q (CTG→CAG) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 4,121,577 | 1 | .→C | 1.1% | 0.5 0.0 ‑0.1 | 181 | coding (171/1332 nt) | hslU | molecular chaperone and ATPase component of HslUV protease |
| * | NC_000913 | 3,944,340 | 0 | A→G | 100.0% | 0.4 | 3 | noncoding (637/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| * | NC_000913 | 4,038,127 | 0 | A→C | 100.0% | 0.4 | 1 | noncoding (609/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 3,619,541 | 0 | G→C | 100.0% | 0.3 | 1 | G117A (GGC→GCC) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 3,619,544 | 0 | G→C | 100.0% | 0.3 | 1 | G118A (GGC→GCC) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 3,619,548 | 0 | A→C | 100.0% | 0.3 | 1 | R119S (AGA→AGC) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 3,553,769 | 1 | .→C | 1.1% | 0.2 0.0 ‑0.0 | 175 | coding (685/2706 nt) | malT | mal regulon transcriptional activator |
| * | NC_000913 | 4,121,577 | 5 | .→T | 1.1% | 0.2 0.0 ‑0.0 | 181 | coding (171/1332 nt) | hslU | molecular chaperone and ATPase component of HslUV protease |
| * | NC_000913 | 3,424,968 | 0 | G→T | 100.0% | 0.1 | 1 | noncoding (1816/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,993 | 0 | T→G | 100.0% | 0.1 | 1 | noncoding (1791/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,994 | 0 | G→T | 100.0% | 0.1 | 1 | noncoding (1790/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,000 | 0 | T→G | 100.0% | 0.1 | 1 | noncoding (1784/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,003 | 0 | A→C | 100.0% | 0.1 | 1 | noncoding (1781/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,022 | 0 | T→G | 100.0% | 0.1 | 1 | noncoding (1762/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,037 | 0 | A→C | 100.0% | 0.1 | 1 | noncoding (1747/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,154,527 | 1 | .→C | 1.2% | 0.1 0.0 ‑0.1 | 169 | coding (321/1152 nt) | argE | acetylornithine deacetylase |
| * | NC_000913 | 4,584,894 | 1 | .→G | 1.2% | 0.1 0.0 ‑0.0 | 172 | coding (1868/3513 nt) | hsdR | endonuclease R Type I restriction enzyme |
| * | NC_000913 | 1,468,192 | 0 | G→T | 100.0% | 0.0 | 3 | A212D (GCC→GAC) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 3,424,959 | 0 | A→G | 100.0% | ‑0.0 | 1 | noncoding (1825/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,960 | 0 | C→G | 100.0% | ‑0.0 | 1 | noncoding (1824/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,965 | 0 | T→C | 100.0% | ‑0.0 | 1 | noncoding (1819/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |