mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.7% | 90.1 / 48.4 | 77 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 11 (0.130) | 4/392 | 8.2 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3505613 | 74 (0.720) | 4 (0.040) | 4/438 | 8.8 | 5.8% | coding (408/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | NC_000913 | 3505821 = | 62 (0.650) | coding (200/1086 nt) | yhfS | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | NC_000913 | 762116 = | 89 (0.870) | 6 (0.060) | 4/442 | 8.9 | 5.8% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 112 (1.160) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | = 2594668 | 87 (0.850) | 4 (0.040) | 4/464 | 9.1 | 4.3% | coding (1192/2016 nt) | tmcA | elongator methionine tRNA (ac4C34) acetyltransferase |
| ? | NC_000913 | = 2594881 | 92 (0.910) | coding (979/2016 nt) | tmcA | elongator methionine tRNA (ac4C34) acetyltransferase | |||||
| * | ? | NC_000913 | 3365320 = | 123 (1.200) | 4 (0.040) | 4/468 | 9.2 | 3.2% | pseudogene (136/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 |
| ? | NC_000913 | 3365914 = | NA (NA) | noncoding (837/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 21 (0.200) | 3 (0.030) | 3/452 | 9.6 | 8.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 44 (0.450) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1233145 = | 119 (1.160) | 3 (0.030) | 3/452 | 9.6 | 2.6% | intergenic (‑115/+31) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| ? | NC_000913 | 1233167 = | 110 (1.120) | intergenic (‑137/+9) | dsbB/nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter | |||||
| * | ? | NC_000913 | 1379063 = | 98 (0.960) | 3 (0.030) | 3/454 | 9.7 | 3.0% | coding (1180/2268 nt) | ycjT | putative family 65 glycosyl hydrolase |
| ? | NC_000913 | 1379100 = | 100 (1.010) | coding (1217/2268 nt) | ycjT | putative family 65 glycosyl hydrolase | |||||
| * | ? | NC_000913 | 764467 = | 112 (1.090) | 3 (0.030) | 3/454 | 9.7 | 2.8% | coding (288/870 nt) | sucD | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit |
| ? | NC_000913 | 766310 = | 104 (1.050) | coding (327/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component | |||||
| * | ? | NC_000913 | 150459 = | 213 (2.080) | 3 (0.030) | 3/458 | 9.7 | 1.6% | coding (495/1239 nt) | yadC | putative fimbrial‑like adhesin protein |
| ? | NC_000913 | 150584 = | 161 (1.610) | coding (370/1239 nt) | yadC | putative fimbrial‑like adhesin protein | |||||