breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 690,144 A→G intergenic (+21/‑2438) bauC → / → PP_RS08750 Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
RA 3,061,793 G→A S592N (AGC→AAC)  qedA_2 → Quinoprotein alcohol dehydrogenase (cytochromec)
RA 3,957,395 C→G G85A (GGG→GCG)  dmlR_13 ← HTH‑type transcriptional regulator DmlR
RA 5,757,239 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ KT2440 87994 88052 59 20 [19] [19] 22 [CJ019_00094]–[CJ019_00095] [CJ019_00094],[CJ019_00095]
* * ÷ KT2440 277576 277703 128 21 [19] [19] 20 [betT2]–[tauD_2] [betT2],[tauD_2]
* * ÷ KT2440 607238 607423 186 22 [17] [19] 20 [ispA] [ispA]
* * ÷ KT2440 674280 674395 116 20 [19] [19] 20 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ KT2440 711460 711584 125 25 [19] [18] 20 [thiO]–[aam] [thiO],[aam]
* * ÷ KT2440 1396578 1396690 113 27 [19] [19] 21 [CJ019_01313]–[mcpU_1] [CJ019_01313],[mcpU_1]
* * ÷ KT2440 1585606 1585719 114 20 [17] [19] 21 CJ019_01493 hypothetical protein
* * ÷ KT2440 1697643 1697753 111 24 [19] [19] 20 [CJ019_01593]–[CJ019_01594] [CJ019_01593],[CJ019_01594]
* * ÷ KT2440 1914566 1914666 101 20 [19] [19] 23 [ppsC_1]–[CJ019_01830] [ppsC_1],[CJ019_01830]
* * ÷ KT2440 1923385 1923538 154 20 [17] [19] 21 [apeB] [apeB]
* * ÷ KT2440 3046190 3046347 158 21 [16] [18] 20 [rcsC_5]–[degU_2] [rcsC_5],[degU_2]
* * ÷ KT2440 3769380 3769484 105 20 [18] [19] 20 CJ019_03581/CJ019_03582 hypothetical protein/hypothetical protein
* * ÷ KT2440 4163752 4163893 142 20 [19] [18] 25 katG/leuO_2 Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
* * ÷ KT2440 4734421 4734567 147 20 [17] [19] 20 [CJ019_04468] [CJ019_04468]
* * ÷ KT2440 4944739 4944888 150 21 [19] [19] 20 [CJ019_04642] [CJ019_04642]
* * ÷ KT2440 5250599 5250735 137 30 [18] [14] 23 [CJ019_04947]–[CJ019_04948] [CJ019_04947],[CJ019_04948]
* * ÷ KT2440 5500284 5500502 219 20 [19] [19] 21 [CJ019_05176] [CJ019_05176]
* * ÷ KT2440 5675170 5675302 133 20 [19] [16] 20 CJ019_05328/CJ019_05329 hypothetical protein/hypothetical protein
* * ÷ KT2440 5896941 5897041 101 21 [19] [18] 20 [CJ019_05521] [CJ019_05521]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? KT2440 4918800 =1 (0.020)75 (1.350) 36/254 0.2 98.7% coding (7/789 nt) soj_1 Sporulation initiation inhibitor protein Soj
?KT2440 = 5539492 NA (NA)intergenic (‑358/+71) CJ019_03622/rlmB IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB
* ? KT2440 = 49188011 (0.020)55 (0.980) 38/256 0.2 98.2% coding (6/789 nt) soj_1 Sporulation initiation inhibitor protein Soj
?KT2440 5216408 = NA (NA)intergenic (‑50/+386) rhaS_5/CJ019_01212 HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9