mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 22 (0.520) | 8 (0.200) | 8/278 | 3.7 | 25.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 26 (0.650) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 270593 | NA (NA) | 5 (0.120) | 5/286 | 5.0 | NA | noncoding (53/1221 nt) | IS30 | repeat region |
| ? | CP009273 | = 270610 | NA (NA) | noncoding (70/1221 nt) | IS30 | repeat region | |||||
| * | ? | CP009273 | = 270406 | NA (NA) | 5 (0.120) | 5/288 | 5.0 | NA | noncoding (201/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270438 | NA (NA) | noncoding (233/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 4 (0.100) | 4/278 | 5.4 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 4511181 = | 58 (1.360) | 4 (0.100) | 4/284 | 5.5 | 6.9% | coding (657/1350 nt) | yjhF | putative transporter |
| ? | CP009273 | 4511198 = | 52 (1.270) | coding (640/1350 nt) | yjhF | putative transporter | |||||
| * | ? | CP009273 | = 3586741 | 41 (0.960) | 3 (0.070) | 3/282 | 6.0 | 7.1% | coding (57/714 nt) | livF | leucine/isoleucine/valine transporter subunit |
| ? | CP009273 | = 3586758 | 40 (0.990) | coding (40/714 nt) | livF | leucine/isoleucine/valine transporter subunit | |||||
| * | ? | CP009273 | 1688073 = | 67 (1.570) | 3 (0.070) | 3/280 | 6.0 | 4.5% | coding (448/1374 nt) | uidB | glucuronide transporter |
| ? | CP009273 | 1688093 = | 64 (1.590) | coding (428/1374 nt) | uidB | glucuronide transporter | |||||
| * | ? | CP009273 | 284116 = | 69 (1.620) | 3 (0.080) | 3/278 | 6.0 | 4.2% | coding (758/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | 284160 = | 73 (1.830) | coding (714/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | = 3770693 | 55 (1.290) | 3 (0.070) | 3/288 | 6.1 | 5.7% | intergenic (+306/‑66) | yibL/lldP | ribosome‑associated DUF2810 family protein/L‑lactate permease |
| ? | CP009273 | = 3770732 | 46 (1.110) | intergenic (+345/‑27) | yibL/lldP | ribosome‑associated DUF2810 family protein/L‑lactate permease | |||||
| * | ? | CP009273 | 605768 = | 42 (0.990) | 3 (0.070) | 3/288 | 6.1 | 6.6% | coding (2183/2241 nt) | fepA | iron‑enterobactin outer membrane transporter |
| ? | CP009273 | 605821 = | 44 (1.060) | coding (2130/2241 nt) | fepA | iron‑enterobactin outer membrane transporter | |||||