mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 56 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2729953 = | NA (NA) | 8 (0.110) | 7/268 | 9.3 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729970 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 224973 | 31 (0.400) | 7 (0.090) | 6/268 | 9.9 | 19.1% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2729970 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 1287084 | 69 (0.890) | 6 (0.090) | 4/240 | 10.4 | 9.2% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | 1287557 = | 60 (0.900) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 1494123 = | 81 (1.050) | 5 (0.070) | 5/266 | 10.5 | 6.3% | intergenic (+13/+25) | trg/ydcI | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor/putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 1494141 = | 71 (0.970) | intergenic (+31/+7) | trg/ydcI | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor/putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 5 (0.070) | 5/274 | 10.8 | NA | coding (734/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274422 = | NA (NA) | coding (696/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 3383293 | 75 (0.970) | 6 (0.080) | 4/256 | 10.9 | 7.8% | intergenic (+28/+35) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | = 3383299 | 74 (1.050) | intergenic (+34/+29) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 3411600 | 83 (1.070) | 4 (0.060) | 4/258 | 11.0 | 5.0% | intergenic (+35/‑51) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3411614 | 74 (1.040) | intergenic (+49/‑37) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 3520369 = | 88 (1.140) | 4 (0.050) | 4/266 | 11.2 | 4.5% | coding (333/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter |
| ? | NC_000913 | 3520400 = | 86 (1.170) | coding (302/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter | |||||
| * | ? | NC_000913 | = 1287084 | 69 (0.890) | 4 (0.060) | 3/242 | 11.2 | 6.1% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | = 4175536 | 63 (0.940) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 1068445 = | 94 (1.210) | 4 (0.050) | 4/266 | 11.2 | 4.0% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4027382 = | 103 (1.400) | noncoding (62/281 nt) | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | |||||