mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 35 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4153627 | 50 (0.800) | 4 (0.080) +26 bp |
4/230 | 7.6 | 8.9% | noncoding (282/346 nt) | REP309 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element, contains 6 REP sequences |
| ? | NC_000913 | = 4153692 | NA (NA) | intergenic (‑595/+3) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase | |||||
| * | ? | NC_000913 | 805897 = | 75 (1.200) | 4 (0.080) +26 bp |
4/230 | 7.6 | 6.1% | noncoding (94/178 nt) | REP72 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element, contains 4 REP sequences |
| ? | NC_000913 | = 4153692 | NA (NA) | intergenic (‑595/+3) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase | |||||
| * | ? | NC_000913 | 805804 = | NA (NA) | 4 (0.080) +26 bp |
4/230 | 7.6 | NA | noncoding (1/178 nt) | REP72 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element, contains 4 REP sequences |
| ? | NC_000913 | = 4153692 | NA (NA) | intergenic (‑595/+3) | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase | |||||
| * | ? | NC_000913 | = 3324949 | 53 (0.850) | 5 (0.090) | 5/262 | 7.8 | 9.2% | intergenic (‑40/+50) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| ? | NC_000913 | = 3324957 | 49 (0.850) | intergenic (‑48/+42) | folP/ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo | |||||
| * | ? | NC_000913 | = 4171606 | 49 (0.790) | 9 (0.150) | 5/270 | 8.0 | 16.1% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213021 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3946687 | 61 (0.980) | 9 (0.150) | 5/270 | 8.0 | 13.4% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4171600 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 2726198 = | NA (NA) | 9 (0.150) | 5/270 | 8.0 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 43 (0.690) | 9 (0.150) | 5/270 | 8.0 | 17.9% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1470336 = | NA (NA) | 62 (0.990) | 5/282 | 8.3 | NA | coding (979/1152 nt) | insI1 | IS30 transposase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 4277034 | 69 (1.110) | 4 (0.070) | 4/266 | 8.6 | 5.8% | coding (1565/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | = 4277042 | 65 (1.110) | coding (1573/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||