mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,672,156 | 1 | .→T | 1.0% | 1.9 0.0 ‑0.3 | 199 | intergenic (‑262/‑258) | yhjB/yhjC | putative DNA‑binding transcriptional response regulator/LysR family putative transcriptional regulator |
| * | NC_000913 | 2,966,912 | 3 | .→T | 1.0% | 1.8 0.0 ‑0.3 | 209 | coding (1523/2247 nt) | ptsP | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| * | NC_000913 | 1,226,371 | 1 | .→T | 1.0% | 1.7 0.0 ‑0.3 | 204 | intergenic (‑291/‑229) | minC/ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| * | NC_000913 | 1,226,371 | 2 | .→T | 1.0% | 1.7 0.0 ‑0.3 | 204 | intergenic (‑291/‑229) | minC/ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| * | NC_000913 | 3,486,633 | 1 | .→A | 1.0% | 1.7 0.0 ‑0.4 | 202 | coding (514/633 nt) | crp | cAMP‑activated global transcription factor, mediator of catabolite repression |
| * | NC_000913 | 3,996,492 | 1 | .→A | 1.0% | 1.7 0.0 ‑0.2 | 204 | coding (206/897 nt) | xerC | site‑specific tyrosine recombinase |
| * | NC_000913 | 3,363,011 | 1 | .→A | 0.8% | 1.6 0.0 ‑0.3 | 263 | coding (205/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein |
| * | NC_000913 | 1,580,102 | 1 | .→C | 0.9% | 1.3 0.0 ‑0.2 | 230 | coding (689/1158 nt) | ydeM | putative YdeN‑specific sulfatase‑maturating enzyme |
| * | NC_000913 | 2,966,912 | 1 | .→G | 1.0% | 1.3 0.0 ‑0.0 | 209 | coding (1523/2247 nt) | ptsP | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| * | NC_000913 | 3,424,972 | 0 | A→C | 100.0% | 1.2 | 1 | noncoding (1812/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,712,444 | 1 | .→G | 0.9% | 1.2 0.0 ‑0.1 | 218 | coding (491/699 nt) | yhjY | autotransporter beta‑domain protein |
| * | NC_000913 | 3,807,951 | 1 | .→C | 1.0% | 1.2 0.0 ‑0.2 | 207 | coding (148/1035 nt) | waaQ | lipopolysaccharide core biosynthesis protein |
| * | NC_000913 | 2,170,457 | 0 | A→C | 100.0% | 1.1 | 3 | K74N (AAA→AAC) | insE1 | IS3 transposase A |
| * | NC_000913 | 3,362,968 | 0 | T→. | 1.3% | 1.1 ‑0.5 ‑0.1 | 229 | coding (162/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein |
| * | NC_000913 | 3,862,268 | 1 | .→T | 1.0% | 1.1 0.0 ‑0.1 | 198 | pseudogene (1336/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 3,363,120 | 0 | G→T | 1.9% | 1.0 ‑0.8 ‑0.0 | 258 | G105V (GGC→GTC) | yhcD | putative outer membrane fimbrial subunit usher protein |
| * | NC_000913 | 3,425,074 | 0 | C→G | 100.0% | 0.9 | 1 | noncoding (1710/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 608,291 | 0 | C→G | 100.0% | 0.8 | 3 | A76G (GCT→GGT) | insL1 | IS186 transposase |
| * | NC_000913 | 3,425,002 | 0 | A→G | 100.0% | 0.8 | 1 | noncoding (1782/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,018 | 0 | C→G | 100.0% | 0.8 | 1 | noncoding (1766/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,132 | 0 | T→C | 100.0% | 0.8 | 1 | noncoding (1652/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,996,484 | 1 | .→G | 1.0% | 0.8 0.0 ‑0.1 | 202 | coding (198/897 nt) | xerC | site‑specific tyrosine recombinase |
| * | NC_000913 | 4,063,468 | 1 | .→G | 1.0% | 0.8 0.0 ‑0.0 | 206 | coding (1222/1266 nt) | yihN | MFS transporter family protein |
| * | NC_000913 | 1,093,400 | 1 | .→A | 0.7% | 0.7 0.0 ‑0.0 | 276 | coding (525/1359 nt) | ycdT | diguanylate cyclase, membrane‑anchored |
| * | NC_000913 | 3,424,986 | 0 | A→T | 100.0% | 0.7 | 1 | noncoding (1798/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,085 | 0 | C→T | 100.0% | 0.7 | 1 | noncoding (1699/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,118 | 0 | C→T | 100.0% | 0.7 | 1 | noncoding (1666/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,126 | 0 | G→T | 100.0% | 0.7 | 1 | noncoding (1658/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,135 | 0 | C→T | 100.0% | 0.7 | 1 | noncoding (1649/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,145 | 0 | G→T | 100.0% | 0.7 | 1 | noncoding (1639/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,730,666 | 0 | G→T | 100.0% | 0.6 | 1 | noncoding (492/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,730,672 | 0 | A→T | 100.0% | 0.5 | 1 | noncoding (486/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| * | NC_000913 | 3,425,094 | 0 | T→G | 100.0% | 0.5 | 1 | noncoding (1690/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,125 | 0 | C→G | 100.0% | 0.5 | 1 | noncoding (1659/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,897,156 | 1 | .→C | 1.0% | 0.5 0.0 ‑0.0 | 209 | coding (383/666 nt) | yieH | phosphoenolpyruvate and 6‑phosphogluconate phosphatase |
| * | NC_000913 | 20,277 | 0 | T→G | 100.0% | 0.4 | 1 | Q13P (CAA→CCA) | insB1 | IS1 transposase B |
| * | NC_000913 | 2,170,462 | 0 | A→C | 100.0% | 0.4 | 1 | Q76P (CAG→CCG) | insE1 | IS3 transposase A |
| * | NC_000913 | 2,730,671 | 0 | T→G | 100.0% | 0.4 | 1 | noncoding (487/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| * | NC_000913 | 3,425,147 | 0 | T→C | 100.0% | 0.4 | 1 | noncoding (1637/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,531,690 | 1 | .→G | 1.0% | 0.3 0.0 ‑0.0 | 194 | intergenic (‑39/+360) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family |
| * | NC_000913 | 2,966,912 | 2 | .→C | 1.0% | 0.2 0.0 ‑0.0 | 209 | coding (1523/2247 nt) | ptsP | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |