mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 35 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | KT2440 | 2,094,831 | 0 | T | G | 69.6% | ‑3.5 / 10.7 | 26 | K178N (AAA→AAC) | CJ019_01995 | hypothetical protein |
| * | KT2440 | 2,950,201 | 0 | T | G | 59.1% | 4.9 / 15.9 | 23 | intergenic (+99/‑97) | spuC_2/puuC_1 | Putrescine‑‑pyruvate aminotransferase/NADP/NAD‑dependent aldehyde dehydrogenase PuuC |
| * | KT2440 | 3,515,112 | 0 | T | G | 59.1% | ‑3.0 / 14.3 | 22 | intergenic (+36/+365) | CJ019_03333/vldH | hypothetical protein/Validoxylamine A 7'‑phosphate phosphatase |
| * | KT2440 | 2,780,706 | 0 | A | T | 57.1% | ‑1.5 / 10.2 | 21 | intergenic (+96/‑29) | ahpC_2/ahpF | Alkyl hydroperoxide reductase C/Alkyl hydroperoxide reductase subunit F |
| * | KT2440 | 4,502,258 | 0 | A | C | 57.1% | ‑1.3 / 22.6 | 35 | G56G (GGT→GGG) | cysG_1 | Siroheme synthase |
| * | KT2440 | 4,245,145 | 0 | A | C | 56.8% | ‑3.9 / 11.8 | 42 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
| * | KT2440 | 5,689,816 | 0 | A | C | 56.2% | 7.7 / 24.5 | 36 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | KT2440 | 3,316,630 | 0 | A | C | 54.5% | 4.7 / 10.6 | 11 | L107R (CTG→CGG) | CJ019_03117 | hypothetical protein |
| * | KT2440 | 3,626,112 | 0 | T | G | 52.6% | 11.4 / 19.4 | 21 | M176R (ATG→AGG) | hcf136_3 | Ycf48‑like protein |
| * | KT2440 | 3,440,363 | 0 | A | C | 52.4% | 12.2 / 21.2 | 21 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | KT2440 | 2,780,734 | 0 | T | G | 52.2% | 9.2 / 28.6 | 23 | intergenic (+124/‑1) | ahpC_2/ahpF | Alkyl hydroperoxide reductase C/Alkyl hydroperoxide reductase subunit F |
| * | KT2440 | 2,938,239 | 0 | A | C | 52.2% | 10.0 / 20.2 | 23 | K537N (AAA→AAC) | pqiB | Intermembrane transport protein PqiB |
| * | KT2440 | 3,285,747 | 0 | T | G | 52.2% | 1.5 / 11.0 | 23 | G658G (GGT→GGG) | tamB | Translocation and assembly module subunit TamB |
| * | KT2440 | 3,784,784 | 0 | T | G | 52.2% | 7.7 / 20.1 | 23 | S531R (AGC→CGC) | dmdC_4 | 3‑methylmercaptopropionyl‑CoA dehydrogenase |
| * | KT2440 | 1,313,943 | 0 | A | C | 51.7% | ‑0.6 / 15.2 | 31 | L614R (CTG→CGG) | CJ019_01235 | hypothetical protein |
| * | KT2440 | 4,279,074 | 0 | T | G | 48.1% | 24.4 / 10.6 | 27 | G278G (GGT→GGG) | hbd | 3‑hydroxybutyryl‑CoA dehydrogenase |
| * | KT2440 | 4,880,208 | 0 | A | C | 45.2% | 18.9 / 11.2 | 42 | G100G (GGT→GGG) | CJ019_04574 | hypothetical protein |
| * | KT2440 | 1,892,029 | 0 | G | C | 42.3% | ‑5.2 / 12.5 | 27 | intergenic (+43/‑477) | PP_RS08755/napA | tRNA‑Asp/Periplasmic nitrate reductase |
| * | KT2440 | 2,770,080 | 0 | A | C | 42.1% | 46.8 / 13.0 | 57 | V161G (GTG→GGG) | CJ019_02613 | hypothetical protein |
| * | KT2440 | 3,264,134 | 0 | T | G | 41.9% | 13.0 / 12.4 | 32 | E336D (GAA→GAC) | CJ019_03065 | Metal reductase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | = 5982606 | 26 (0.460) | 6 (0.110) | 6/238 | 4.2 | 23.4% | intergenic (+65/‑624) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | KT2440 | 5982798 = | 15 (0.280) | intergenic (+257/‑432) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||