mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 2,094,808 | 0 | A | C | 62.8% | 6.8 / 11.8 | 47 | L186R (CTG→CGG) | CJ019_01995 | hypothetical protein |
| * | ACB143 | 1,524,732 | 0 | T | G | 57.9% | ‑2.0 / 22.6 | 38 | Q67P (CAG→CCG) | CJ019_01439 | hypothetical protein |
| * | ACB143 | 3,784,658 | 0 | A | C | 55.6% | 8.8 / 19.3 | 18 | V567G (GTG→GGG) | dmdC_4 | 3‑methylmercaptopropionyl‑CoA dehydrogenase |
| * | ACB143 | 1,433,079 | 0 | T | G | 54.5% | 1.7 / 11.7 | 12 | intergenic (‑356/‑303) | yveA/CJ019_01212 | Aspartate‑proton symporter/IS110 family transposase ISPpu9 |
| * | ACB143 | 5,978,612 | 0 | A | C | 53.1% | ‑2.2 / 29.3 | 52 | Q688P (CAG→CCG) | sasA_19 | Adaptive‑response sensory‑kinase SasA |
| * | ACB143 | 1,524,728 | 0 | T | G | 52.6% | 5.7 / 24.4 | 38 | P68P (CCA→CCC) | CJ019_01439 | hypothetical protein |
| * | ACB143 | 5,693,175 | 0 | A | C | 51.6% | 4.6 / 19.1 | 31 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | ACB143 | 2,189,911 | 0 | T | C | 46.5% | 22.5 / 186.9 | 128 | T46A (ACC→GCC) | CJ019_02075 | hypothetical protein |
| * | ACB143 | 3,440,346 | 0 | A | C | 45.7% | 22.7 / 10.9 | 35 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | ACB143 | 2,113,897 | 0 | C | G | 41.7% | 51.6 / 15.1 | 36 | S664* (TCA→TGA) | CJ019_02007 | hypothetical protein |
| * | ACB143 | 6,043,196 | 0 | C | A | 37.0% | 101.0 / 48.2 | 100 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| * | ACB143 | 4,667,082 | 0 | G | T | 35.2% | 52.4 / 17.3 | 54 | L161L (CTC→CTA) | chrR | Quinone reductase |
| * | ACB143 | 1,537,424 | 0 | C | G | 35.0% | 27.1 / 11.1 | 20 | A391G (GCG→GGG) | mdfA | Multidrug transporter MdfA |
| * | ACB143 | 3,138,350 | 0 | T | G | 34.7% | 48.7 / 13.5 | 49 | F240V (TTT→GTT) | rbsC_2 | Ribose import permease protein RbsC |
| * | ACB143 | 3,875,861 | 0 | A | C | 34.2% | 110.0 / 10.2 | 73 | T298P (ACC→CCC) | ttgI_2 | Toluene efflux pump outer membrane protein TtgI |
| * | ACB143 | 4,245,128 | 0 | A | C | 33.9% | 36.6 / 12.6 | 61 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
| * | ACB143 | 4,038,197 | 0 | A | C | 33.3% | 94.1 / 10.6 | 54 | V380G (GTG→GGG) | sotB_2 | sugar efflux transporter |
| * | ACB143 | 3,588,888 | 0 | C | A | 29.2% | 108.3 / 14.1 | 72 | A21S (GCG→TCG) | CJ019_03404 | hypothetical protein |
| * | ACB143 | 4,287,821 | 0 | G | T | 28.9% | 82.1 / 11.7 | 46 | intergenic (+143/‑82) | CJ019_04021/gloA | hypothetical protein/Lactoylglutathione lyase |
| * | ACB143 | 5,840,134 | 0 | T | G | 28.9% | 135.3 / 15.0 | 91 | V23G (GTG→GGG) | CJ019_05466 | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 2465142 = | 16 (0.260) | 3 (0.070) | 3/184 | 4.1 | 18.1% | intergenic (+6/+143) | CJ019_02324/CJ019_02325 | hypothetical protein/hypothetical protein |
| ? | ACB143 | 2465266 = | 16 (0.380) | intergenic (+130/+19) | CJ019_02324/CJ019_02325 | hypothetical protein/hypothetical protein | |||||
| * | ? | ACB143 | = 5985965 | 36 (0.600) | 3 (0.050) | 3/246 | 5.1 | 8.0% | intergenic (+65/‑624) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | ACB143 | 5986157 = | 35 (0.620) | intergenic (+257/‑432) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||