mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 417,560 | 1 | .→C | 2.6% | 2.6 0.0 ‑0.8 | 76 | coding (419/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| * | NC_000913 | 1,226,255 | 1 | .→A | 2.7% | 2.6 0.0 ‑0.2 | 75 | intergenic (‑175/‑345) | minC/ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| * | NC_000913 | 294,210 | 1 | .→G | 2.4% | 2.5 0.0 ‑0.5 | 82 | coding (590/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein |
| * | NC_000913 | 294,210 | 3 | .→A | 2.4% | 2.5 0.0 ‑0.9 | 82 | coding (590/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein |
| * | NC_000913 | 294,210 | 5 | .→A | 2.4% | 2.5 0.0 ‑0.9 | 82 | coding (590/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein |
| * | NC_000913 | 3,128,137 | 1 | .→T | 2.7% | 2.5 0.0 ‑0.7 | 73 | intergenic (‑116/‑135) | glcD/glcC | glycolate oxidase subunit, FAD‑linked/glycolate‑inducible glc operon transcriptional repressor; autorepressor |
| * | NC_000913 | 294,210 | 4 | .→T | 2.4% | 2.4 0.0 ‑0.9 | 82 | coding (590/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein |
| * | NC_000913 | 294,210 | 2 | .→A | 2.4% | 2.3 0.0 ‑0.5 | 82 | coding (590/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein |
| * | NC_000913 | 3,467,435 | 2 | .→A | 2.7% | 2.3 0.0 ‑0.4 | 74 | coding (2419/2694 nt) | chiA | periplasmic endochitinase |
| * | NC_000913 | 3,746,287 | 1 | .→G | 2.8% | 2.3 0.0 ‑0.9 | 71 | coding (194/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein |
| * | NC_000913 | 5,931 | 1 | .→A | 1.9% | 2.2 0.0 ‑0.8 | 108 | coding (529/777 nt) | yaaA | peroxide resistance protein, lowers intracellular iron |
| * | NC_000913 | 294,210 | 6 | .→A | 2.4% | 2.2 0.0 ‑0.4 | 82 | coding (590/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein |
| * | NC_000913 | 3,746,287 | 2 | .→G | 2.8% | 2.2 0.0 ‑0.3 | 71 | coding (194/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein |
| * | NC_000913 | 4,064,037 | 1 | .→T | 2.7% | 2.2 0.0 ‑0.3 | 74 | coding (259/693 nt) | ompL | outer membrane porin L; putative sulpholipid porin |
| * | NC_000913 | 270,830 | 0 | C→A | 100.0% | 2.0 | 2 | S76R (AGC→AGA) | insI1 | IS30 transposase |
| * | NC_000913 | 3,467,435 | 1 | .→G | 2.7% | 2.0 0.0 ‑0.6 | 74 | coding (2419/2694 nt) | chiA | periplasmic endochitinase |
| * | NC_000913 | 4,166,550 | 0 | C→A | 100.0% | 2.0 | 2 | intergenic (+265/‑109) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| * | NC_000913 | 2,191,961 | 1 | .→C | 2.5% | 1.9 0.0 ‑0.3 | 81 | coding (262/543 nt) | yehD | putative fimbrial‑like adhesin protein |
| * | NC_000913 | 381,545 | 0 | A→C | 100.0% | 1.6 | 2 | E65D (GAA→GAC) | insC1 | IS2 repressor TnpA |
| * | NC_000913 | 3,746,287 | 4 | .→C | 2.8% | 1.6 0.0 ‑0.1 | 71 | coding (194/987 nt) | yiaO | 2,3‑diketo‑L‑gulonate‑binding periplasmic protein |
| * | NC_000913 | 1,396,311 | 0 | A→C | 100.0% | 1.5 | 4 | Q79P (CAG→CCG) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 4,039,099 | 0 | C→A | 100.0% | 1.5 | 3 | noncoding (1581/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,166,561 | 0 | A→C | 100.0% | 1.5 | 2 | intergenic (+276/‑98) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| * | NC_000913 | 3,187,152 | 0 | T→G | 100.0% | 1.4 | 2 | L215V (TTG→GTG) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 3,467,435 | 3 | .→G | 2.7% | 1.4 0.0 ‑0.3 | 74 | coding (2419/2694 nt) | chiA | periplasmic endochitinase |
| * | NC_000913 | 2,171,153 | 0 | C→A | 100.0% | 1.3 | 1 | Q208K (CAA→AAA) | insF1 | IS3 transposase B |
| * | NC_000913 | 3,427,363 | 0 | G→T | 100.0% | 1.3 | 1 | noncoding (1400/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,095,214 | 0 | C→T | 100.0% | 1.2 | 1 | R75H (CGC→CAC) | insE1 | IS3 transposase A |
| * | NC_000913 | 2,996,600 | 0 | A→C | 100.0% | 1.2 | 2 | S226R (AGT→AGG) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 3,424,224 | 0 | T→G | 100.0% | 1.2 | 1 | noncoding (2560/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,427,247 | 0 | C→T | 100.0% | 1.2 | 1 | noncoding (1516/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,396,320 | 0 | A→C | 100.0% | 1.1 | 2 | Y82S (TAC→TCC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,424,235 | 0 | A→C | 100.0% | 1.1 | 1 | noncoding (2549/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 316,206 | 0 | C→G | 100.0% | 1.0 | 2 | A207G (GCG→GGG) | insF1 | IS3 transposase B |
| * | NC_000913 | 3,424,185 | 0 | C→A | 100.0% | 1.0 | 1 | noncoding (2599/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,197 | 0 | T→A | 100.0% | 1.0 | 1 | noncoding (2587/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,215 | 0 | C→A | 100.0% | 1.0 | 1 | noncoding (2569/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,187 | 0 | T→C | 100.0% | 1.0 | 2 | noncoding (1597/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,467,435 | 5 | .→C | 2.7% | 1.0 0.0 ‑0.1 | 74 | coding (2419/2694 nt) | chiA | periplasmic endochitinase |
| * | NC_000913 | 3,620,870 | 0 | T→G | 100.0% | 0.1 | 5 | M560R (ATG→AGG) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 4,447,846 | 1 | .→G | 2.9% | 0.1 0.0 ‑0.0 | 70 | coding (3735/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |