mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,979,248 | 0 | T | C | 50.0% | ‑6.4 / 15.1 | 13 | noncoding (1553/2928 nt) | EO946_RS15430 | 23S ribosomal RNA |
| * | NZ_CP034943 | 3,285,580 | 0 | A | G | 45.2% | 131.6 / inf | 264 | I274T (ATA→ACA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,647 | 0 | C | A | 45.2% | 152.6 / inf | 292 | V252L (GTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,575 | 0 | T | G | 39.9% | 243.9 / 301.6 | 261 | N276H (AAT→CAT) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,567 | 0 | C | T | 39.1% | 232.1 / inf | 259 | L278L (CTG→CTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 1,366,115 | 0 | G | C | 36.5% | 134.3 / 32.2 | 101 | E205Q (GAA→CAA) ‡ | EO946_RS07135 | PepSY domain‑containing protein |
| * | NZ_CP034943 | 3,285,713 | 0 | G | A | 35.0% | 183.6 / 146.7 | 140 | L230L (CTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 2,991,227 | 0 | T | G | 32.4% | 204.4 / 41.6 | 142 | intergenic (+28/‑179) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 17,887 | 0 | G | T | 31.6% | 157.0 / 15.5 | 101 | E248D (GAG→GAT) | dacA | D‑alanyl‑D‑alanine carboxypeptidase |
| * | NZ_CP034943 | 634,054 | 0 | C | G | 31.5% | 172.2 / 33.4 | 113 | E573Q (GAA→CAA) ‡ | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 634,064 | 0 | C | G | 30.9% | 223.8 / 27.5 | 121 | W569C (TGG→TGC) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 1,366,117 | 0 | A | C | 30.7% | 139.9 / 24.0 | 101 | E205D (GAA→GAC) ‡ | EO946_RS07135 | PepSY domain‑containing protein |
| * | NZ_CP034943 | 2,991,236 | 0 | C | G | 28.4% | 250.6 / 30.7 | 130 | intergenic (+37/‑170) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 1,730,096 | 0 | G | C | 28.0% | 131.9 / 12.1 | 75 | E173Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 634,058 | 0 | C | G | 25.5% | 203.7 / 13.0 | 113 | K571N (AAG→AAC) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 2,270,064 | 0 | G | C | 24.8% | 233.8 / 14.1 | 114 | L39V (CTA→GTA) | prsW | glutamic‑type intramembrane protease PrsW |
| * | NZ_CP034943 | 634,052 | 0 | T | G | 24.1% | 203.5 / 15.2 | 113 | E573D (GAA→GAC) ‡ | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 3,394,367 | 0 | C | G | 23.4% | 412.3 / 22.1 | 172 | G178A (GGA→GCA) | ppaX | pyrophosphatase PpaX |
| * | NZ_CP034943 | 549,085 | 0 | C | A | 22.8% | 332.0 / 31.3 | 171 | Q33K (CAA→AAA) | EO946_RS02865 | PLP‑dependent aminotransferase family protein |
| * | NZ_CP034943 | 549,144 | 0 | A | C | 22.8% | 253.3 / 11.0 | 136 | Q52H (CAA→CAC) | EO946_RS02865 | PLP‑dependent aminotransferase family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 607695 = | 158 (0.900) | 22 (0.130) +AGTAGCCCCT |
16/248 | 4.4 | 10.7% | coding (538/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 241 (1.370) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607210 | 238 (1.350) | 30 (0.170) | 10/264 | 6.5 | 12.6% | coding (53/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607526 = | 181 (1.040) | coding (369/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607659 = | 150 (0.850) | 9 (0.060) +AGTAGCCCCT |
5/248 | 8.3 | 4.7% | coding (502/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 242 (1.370) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||