mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 3,440,346 | 0 | A | C | 56.7% | 10.7 / 30.0 | 31 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | ACB143 | 2,043,578 | 0 | A | C | 55.0% | 4.6 / 15.8 | 23 | intergenic (‑14/+161) | smrA/CJ019_01939 | putative DNA endonuclease SmrA/hypothetical protein |
| * | ACB143 | 3,440,331 | 0 | T | G | 52.0% | 3.6 / 17.9 | 28 | A19A (GCT→GCG) | CJ019_03266 | hypothetical protein |
| * | ACB143 | 4,425,070 | 0 | G | C | 42.3% | 26.3 / 14.6 | 26 | intergenic (‑29/‑89) | CJ019_04200/CJ019_04201 | hypothetical protein/hypothetical protein |
| * | ACB143 | 6,067,354 | 0 | A | C | 40.0% | 79.8 / 15.8 | 56 | V162G (GTG→GGG) | cheB_5 | Protein‑glutamatemethylesterase/protein‑glutamin e glutaminase |
| * | ACB143 | 1,175,559 | 0 | G | T | 37.1% | 86.8 / 13.2 | 62 | P51P (CCG→CCT) | tadA | tRNA‑specific adenosine deaminase |
| * | ACB143 | 2,113,895 | 0 | T | G | 35.5% | 36.6 / 11.5 | 31 | R663R (CGT→CGG) | CJ019_02007 | hypothetical protein |
| * | ACB143 | 3,989,975 | 0 | G | C | 33.3% | 50.4 / 12.3 | 36 | intergenic (+25/+20) | CJ019_03768/CJ019_03769 | hypothetical protein/hypothetical protein |
| * | ACB143 | 6,129,795 | 0 | T | C | 27.3% | 36.8 / 13.6 | 42 | T418A (ACC→GCC) | copA_4 | Copper resistance protein A |
| * | ACB143 | 169,705 | 0 | A | C | 23.1% | 37.3 / 13.5 | 27 | intergenic (+669/+3018) | PP_RS08750/fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| * | ACB143 | 5,530,525 | 0 | A | T | 21.4% | 112.9 / 11.2 | 56 | *379K (TAA→AAA) | braC_2 | Leucine‑, isoleucine‑, valine‑, threonine‑, and alanine‑binding protein |
| * | ACB143 | 169,760 | 0 | A | C | 20.8% | 144.9 / 35.9 | 73 | intergenic (+724/+2963) | PP_RS08750/fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 5985965 | 44 (0.740) | 4 (0.070) | 4/244 | 6.1 | 9.6% | intergenic (+65/‑624) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | ACB143 | 5986157 = | 34 (0.610) | intergenic (+257/‑432) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||
| * | ? | ACB143 | = 198592 | 49 (0.820) | 3 (0.050) | 3/242 | 6.6 | 5.7% | coding (13451/28449 nt) | CJ019_00185 | hypothetical protein |
| ? | ACB143 | = 2457733 | 54 (0.970) | coding (942/1350 nt) | cusS_2 | Sensor histidine kinase CusS | |||||
| * | ? | ACB143 | = 205219 | 59 (0.990) | 3 (0.050) | 3/248 | 6.8 | 4.9% | coding (20078/28449 nt) | CJ019_00185 | hypothetical protein |
| ? | ACB143 | = 2457736 | 60 (1.050) | coding (939/1350 nt) | cusS_2 | Sensor histidine kinase CusS | |||||
| * | ? | ACB143 | = 209173 | NA (NA) | 3 (0.050) | 3/254 | 6.9 | 4.4% | coding (24032/28449 nt) | CJ019_00185 | hypothetical protein |
| ? | ACB143 | = 2457742 | 66 (1.100) | coding (933/1350 nt) | cusS_2 | Sensor histidine kinase CusS | |||||
| * | ? | ACB143 | = 5386378 | 61 (1.020) | 3 (0.050) | 3/258 | 7.0 | 4.9% | intergenic (‑387/+1264) | CJ019_05070/nptII | hypothetical protein/neomycin phosphotransferase |
| ? | ACB143 | 5395906 = | 57 (0.960) | intergenic (+2/‑9) | CJ019_05073/CJ019_05074 | hypothetical protein/hypothetical protein | |||||
| * | ? | ACB143 | = 4759431 | 78 (1.300) | 3 (0.050) | 3/258 | 7.0 | 4.3% | intergenic (+46/‑94) | fpvA_3/ligM_KToptimized | Ferripyoverdine receptor/sequence generated by OPTIMIZER for KT2440 |
| ? | ACB143 | 4760973 = | 56 (0.940) | intergenic (+33/+22) | ligM_KToptimized/lip2 | sequence generated by OPTIMIZER for KT2440/Lipase 2 | |||||