mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 34 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,285,647 | 0 | C | A | 41.6% | 202.4 / inf | 298 | V252L (GTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,580 | 0 | A | G | 40.0% | 256.5 / inf | 286 | I274T (ATA→ACA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,575 | 0 | T | G | 36.4% | 348.2 / 308.4 | 298 | N276H (AAT→CAT) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,567 | 0 | C | T | 35.2% | 350.5 / inf | 298 | L278L (CTG→CTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 2,991,227 | 0 | T | G | 32.8% | 179.9 / 36.3 | 123 | intergenic (+28/‑179) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 2,991,236 | 0 | C | G | 31.2% | 183.5 / 29.3 | 116 | intergenic (+37/‑170) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 2,991,252 | 0 | C | A | 29.8% | 166.2 / 19.5 | 105 | intergenic (+53/‑154) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 3,285,713 | 0 | G | A | 29.8% | 228.1 / 121.7 | 141 | L230L (CTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 634,054 | 0 | C | G | 28.0% | 233.9 / 22.2 | 121 | E573Q (GAA→CAA) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 1,730,093 | 0 | G | C | 27.9% | 174.4 / 20.2 | 106 | E172Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 1,730,075 | 0 | G | C | 27.8% | 228.0 / 25.6 | 126 | E166Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 2,991,245 | 0 | G | T | 27.6% | 170.2 / 17.6 | 116 | intergenic (+46/‑161) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 2,270,064 | 0 | G | C | 26.8% | 225.7 / 19.5 | 134 | L39V (CTA→GTA) | prsW | glutamic‑type intramembrane protease PrsW |
| * | NZ_CP034943 | 2,270,052 | 0 | G | C | 26.3% | 232.7 / 23.3 | 136 | L43V (CTT→GTT) | prsW | glutamic‑type intramembrane protease PrsW |
| * | NZ_CP034943 | 549,144 | 0 | A | C | 26.0% | 262.8 / 27.4 | 150 | Q52H (CAA→CAC) | EO946_RS02865 | PLP‑dependent aminotransferase family protein |
| * | NZ_CP034943 | 2,270,043 | 0 | G | T | 25.4% | 210.3 / 19.1 | 138 | P46T (CCC→ACC) | prsW | glutamic‑type intramembrane protease PrsW |
| * | NZ_CP034943 | 718,299 | 0 | C | T | 25.1% | 341.9 / 129.1 | 180 | intergenic (+325/‑666) | rlmD/EO946_RS03705 | 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD/type I restriction‑modification system subunit M |
| * | NZ_CP034943 | 3,394,378 | 0 | C | G | 25.0% | 330.5 / 19.0 | 166 | G174G (GGG→GGC) | ppaX | pyrophosphatase PpaX |
| * | NZ_CP034943 | 1,366,117 | 0 | A | C | 24.3% | 245.8 / 15.4 | 137 | E205D (GAA→GAC) | EO946_RS07135 | PepSY domain‑containing protein |
| * | NZ_CP034943 | 3,557,300 | 0 | C | A | 24.2% | 377.7 / 18.3 | 201 | V886V (GTG→GTT) | EO946_RS18295 | SpaA isopeptide‑forming pilin‑related protein |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 619275 | 139 (0.690) | 48 (0.240) | 22/266 | 3.9 | 25.6% | coding (1271/1398 nt) | gmuD | 6‑phospho‑beta‑glucosidase GmuD |
| ? | NZ_CP034943 | 619290 = | 142 (0.720) | coding (1286/1398 nt) | gmuD | 6‑phospho‑beta‑glucosidase GmuD | |||||
| * | ? | NZ_CP034943 | 607677 = | 149 (0.740) | 40 (0.200) +C |
15/268 | 5.5 | 17.8% | coding (520/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607837 | 222 (1.110) | coding (680/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 2557054 = | 258 (1.290) | 6 (0.030) | 6/244 | 8.1 | 2.4% | coding (180/756 nt) | EO946_RS13225 | metal‑binding protein ZinT |
| ? | NZ_CP034943 | = 2557050 | 247 (1.370) | coding (184/756 nt) | EO946_RS13225 | metal‑binding protein ZinT | |||||
| * | ? | NZ_CP034943 | = 607210 | 321 (1.600) | 18 (0.090) | 7/266 | 8.1 | 6.7% | coding (53/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607526 = | 182 (0.920) | coding (369/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607210 | 321 (1.600) | 15 (0.080) | 7/266 | 8.1 | 5.4% | coding (53/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607481 = | 213 (1.080) | coding (324/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607179 = | 310 (1.550) | 12 (0.060) +CGCTCCC |
6/256 | 8.4 | 4.4% | coding (22/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607837 | 238 (1.190) | coding (680/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607222 | 306 (1.530) | 13 (0.070) +TACC |
6/262 | 8.5 | 5.7% | coding (65/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607587 = | 140 (0.700) | coding (430/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607225 | 295 (1.470) | 4 (0.020) +26 bp |
4/218 | 8.6 | 2.2% | coding (68/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607675 = | 149 (0.740) | coding (518/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607479 = | 224 (1.120) | 3 (0.020) | 3/218 | 9.2 | 1.9% | coding (322/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607604 | 133 (0.820) | coding (447/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607409 | 224 (1.120) | 6 (0.030) | 4/260 | 9.6 | 2.7% | coding (252/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607419 = | 212 (1.100) | coding (262/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||