mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 15,571 | T→C | 100% | L43L (TTG→CTG) | EK12AG100_RS00080 → | IS4‑like element IS421 family transposase |
| MC JC | 61,414 | Δ168 bp | 100% | [rapA] | [rapA] | |
| RA | 246,915 | T→G | 100% | S12S (TCT→TCG) | EK12AG100_RS01160 → | C40 family peptidase |
| RA | 283,927 | G→T | 100% | A445A (GCG→GCT) | EK12AG100_RS01390 → | xylonate dehydratase YagF |
| RA | 312,935 | A→G | 100% | intergenic (‑301/+173) | EK12AG100_RS01540 ← / ← EK12AG100_RS24935 | hypothetical protein/oxidoreductase |
| RA | 339,234 | T→C | 46.8% | V17A (GTC→GCC) | EK12AG100_RS01670 → | hypothetical protein |
| RA | 339,240 | T→C | 48.7% | I19T (ATT→ACT) | EK12AG100_RS01670 → | hypothetical protein |
| RA | 339,257 | A→G | 53.0% | N25D (AAC→GAC) | EK12AG100_RS01670 → | hypothetical protein |
| RA | 339,278 | A→G | 58.5% | M32V (ATG→GTG) | EK12AG100_RS01670 → | hypothetical protein |
| RA | 339,285 | A→G | 58.3% | Q34R (CAA→CGA) | EK12AG100_RS01670 → | hypothetical protein |
| RA | 339,327 | T→C | 17.2% | V48A (GTC→GCC) | EK12AG100_RS01670 → | hypothetical protein |
| RA | 339,333 | T→C | 15.9% | I50T (ATT→ACT) | EK12AG100_RS01670 → | hypothetical protein |
| JC | 339,349 | +186 bp | 29.4% | coding (165/204 nt) | EK12AG100_RS01670 → | hypothetical protein |
| RA | 384,896 | A→C | 100% | G122G (GGA→GGC) | tauA → | taurine ABC transporter substrate‑binding protein |
| RA | 393,261 | T→C | 100% | pseudogene (987/1443 nt) | EK12AG100_RS01925 → | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | 464,304 | A→G | 100% | V181V (GTT→GTC) | queC ← | 7‑cyano‑7‑deazaguanine synthase QueC |
| RA | 494,921 | T→C | 100% | I168T (ATC→ACC) | htpG → | molecular chaperone HtpG |
| RA | 534,041 | A→G | 100% | D276G (GAT→GGT) | gcl → | glyoxylate carboligase |
| RA | 575,369 | C→G | 100% | P34R (CCG→CGG) | rzoD → | prophage lysis lipoprotein RzoD |
| RA | 575,513 | T→C | 100% | intergenic (+62/+29) | rzoD → / ← bor | prophage lysis lipoprotein RzoD/serum resistance lipoprotein Bor |
| RA | 575,516 | C→A | 100% | intergenic (+65/+26) | rzoD → / ← bor | prophage lysis lipoprotein RzoD/serum resistance lipoprotein Bor |
| RA | 575,547 | G→T | 100% | Q97K (CAA→AAA) | bor ← | serum resistance lipoprotein Bor |
| RA | 575,671 | G→A | 100% | A55A (GCC→GCT) | bor ← | serum resistance lipoprotein Bor |
| RA | 575,751 | C→T | 100% | A29T (GCA→ACA) | bor ← | serum resistance lipoprotein Bor |
| RA | 575,753 | G→T | 100% | P28Q (CCG→CAG) | bor ← | serum resistance lipoprotein Bor |
| RA | 575,773 | C→T | 100% | T21T (ACG→ACA) | bor ← | serum resistance lipoprotein Bor |
| RA | 575,946 | T→C | 100% | intergenic (‑111/+179) | bor ← / ← EK12AG100_RS02865 | serum resistance lipoprotein Bor/DUF1398 domain‑containing protein |
| RA | 576,036:1 | +A | 100% | intergenic (‑201/+89) | bor ← / ← EK12AG100_RS02865 | serum resistance lipoprotein Bor/DUF1398 domain‑containing protein |
| RA | 576,068 | C→T | 100% | intergenic (‑233/+57) | bor ← / ← EK12AG100_RS02865 | serum resistance lipoprotein Bor/DUF1398 domain‑containing protein |
| RA | 576,075 | C→T | 100% | intergenic (‑240/+50) | bor ← / ← EK12AG100_RS02865 | serum resistance lipoprotein Bor/DUF1398 domain‑containing protein |
| RA | 576,087 | G→A | 100% | intergenic (‑252/+38) | bor ← / ← EK12AG100_RS02865 | serum resistance lipoprotein Bor/DUF1398 domain‑containing protein |
| RA | 576,212 | A→G | 100% | H108H (CAT→CAC) | EK12AG100_RS02865 ← | DUF1398 domain‑containing protein |
| RA | 576,226 | C→T | 100% | V104I (GTT→ATT) | EK12AG100_RS02865 ← | DUF1398 domain‑containing protein |
| RA | 576,326 | G→A | 100% | N70N (AAC→AAT) | EK12AG100_RS02865 ← | DUF1398 domain‑containing protein |
| RA | 576,398 | G→A | 100% | I46I (ATC→ATT) | EK12AG100_RS02865 ← | DUF1398 domain‑containing protein |
| RA | 576,443 | G→A | 100% | N31N (AAC→AAT) | EK12AG100_RS02865 ← | DUF1398 domain‑containing protein |
| RA | 576,481 | C→T | 100% | D19N (GAC→AAC) | EK12AG100_RS02865 ← | DUF1398 domain‑containing protein |
| RA | 576,592 | T→C | 100% | intergenic (‑57/‑229) | EK12AG100_RS02865 ← / → EK12AG100_RS02870 | DUF1398 domain‑containing protein/hypothetical protein |
| RA | 576,658 | C→A | 100% | intergenic (‑123/‑163) | EK12AG100_RS02865 ← / → EK12AG100_RS02870 | DUF1398 domain‑containing protein/hypothetical protein |
| RA | 576,752 | T→C | 100% | intergenic (‑217/‑69) | EK12AG100_RS02865 ← / → EK12AG100_RS02870 | DUF1398 domain‑containing protein/hypothetical protein |
| RA | 576,961 | A→G | 100% | R47R (AGA→AGG) | EK12AG100_RS02870 → | hypothetical protein |
| RA | 577,056 | T→C | 100% | intergenic (+29/+136) | EK12AG100_RS02870 → / ← EK12AG100_RS02875 | hypothetical protein/YlcI/YnfO family protein |
| RA | 577,243 | T→C | 100% | R48R (AGA→AGG) | EK12AG100_RS02875 ← | YlcI/YnfO family protein |
| RA | 577,658 | A→G | 100% | intergenic (‑272/‑117) | EK12AG100_RS02875 ← / → EK12AG100_RS02885 | YlcI/YnfO family protein/DNA‑packaging protein |
| RA | 577,983 | G→T | 100% | R70L (CGG→CTG) | EK12AG100_RS02885 → | DNA‑packaging protein |
| RA | 577,997 | G→A | 100% | A75T (GCA→ACA) | EK12AG100_RS02885 → | DNA‑packaging protein |
| RA | 578,059 | C→T | 100% | D95D (GAC→GAT) | EK12AG100_RS02885 → | DNA‑packaging protein |
| RA | 578,068 | A→G | 100% | E98E (GAA→GAG) | EK12AG100_RS02885 → | DNA‑packaging protein |
| RA | 578,126 | T→C | 100% | L118L (TTG→CTG) | EK12AG100_RS02885 → | DNA‑packaging protein |
| RA | 578,168 | C→A | 100% | L132I (CTC→ATC) | EK12AG100_RS02885 → | DNA‑packaging protein |
| RA | 579,538 | T→C | 100% | N61S (AAT→AGT) | EK12AG100_RS02895 ← | class I SAM‑dependent methyltransferase |
| RA | 691,882 | A→G | 100% | L5L (CTT→CTC) | miaB ← | tRNA (N6‑isopentenyl adenosine(37)‑C2)‑methylthiotransferase MiaB |
| RA | 693,411 | T→C | 100% | intergenic (+194/+72) | ubiF → / ← EK12AG100_RS03430 | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln |
| RA | 705,715 | A→G | 100% | A147A (GCA→GCG) | chiP → | chitoporin |
| RA | 718,545 | A→G | 100% | C44R (TGT→CGT) | kdpE ← | two‑component system response regulator KdpE |
| RA | 777,565 | T→C | 100% | noncoding (71/76 nt) | EK12AG100_RS03840 → | tRNA‑Lys |
| RA | 786,521 | A→C | 100% | pseudogene (400/1149 nt) | galK ← | galactokinase |
| RA | 841,687 | C→A | 100% | T21T (ACC→ACA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,690 | T→C | 100% | I22I (ATT→ATC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,702 | C→A | 100% | A26A (GCC→GCA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,704 | G→A | 100% | R27K (AGA→AAA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,736 | G→C | 100% | V38L (GTG→CTG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,740 | G→C | 100% | G39A (GGC→GCC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,747 | G→A | 100% | E41E (GAG→GAA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,780 | T→C | 100% | D52D (GAT→GAC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,783 | G→T | 100% | V53V (GTG→GTT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,801 | T→C | 100% | S59S (AGT→AGC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,804 | C→T | 100% | V60V (GTC→GTT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,807 | C→T | 100% | I61I (ATC→ATT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,811 | 2 bp→TT | 100% | coding (187‑188/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,816 | T→G | 100% | V64V (GTT→GTG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,819 | C→A | 100% | D65E (GAC→GAA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,822 | T→A | 100% | G66G (GGT→GGA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,825 | T→C | 100% | F67F (TTT→TTC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,828 | A→G | 100% | P68P (CCA→CCG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,831 | A→G | 100% | P69P (CCA→CCG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,834 | G→A | 100% | S70S (TCG→TCA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,837 | C→T | 100% | H71H (CAC→CAT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,849 | C→T | 100% | I75I (ATC→ATT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,867 | A→T | 100% | S81S (TCA→TCT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,873 | G→C | 100% | P83P (CCG→CCC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,876 | G→T | 100% | G84G (GGG→GGT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,895 | T→G | 100% | C91G (TGT→GGT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,921 | G→T | 100% | R99R (CGG→CGT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,929 | 2 bp→CA | 100% | coding (305‑306/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,936 | T→C | 100% | R104R (CGT→CGC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,940 | C→T | 100% | L106F (CTT→TTT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,980 | T→C | 100% | V119A (GTG→GCG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 841,992 | 2 bp→AC | 100% | coding (368‑369/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,001 | A→C | 100% | D126A (GAC→GCC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,011 | A→G | 100% | K129K (AAA→AAG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,018 | G→A | 100% | G132S (GGC→AGT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,020 | C→T | 100% | G132S (GGC→AGT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,029 | 2 bp→CA | 100% | coding (405‑406/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,038 | 3 bp→CCG | 100% | coding (414‑416/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,042 | C→G | 100% | Q140E (CAG→GAG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,046 | 2 bp→CG | 100% | coding (422‑423/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,050 | 2 bp→AA | 100% | coding (426‑427/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,055 | T→A | 100% | L144H (CTT→CAT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,058 | T→C | 100% | V145A (GTG→GCG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,060 | A→G | 100% | T146A (ACT→GCT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,068 | 2 bp→TG | 100% | coding (444‑445/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,071 | T→G | 100% | T149A (ACT→GCG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,086 | C→A | 100% | A154A (GCC→GCA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,098 | C→A | 100% | S158S (TCC→TCA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,110 | T→C | 100% | A162A (GCT→GCC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,113 | A→G | 100% | A163A (GCA→GCG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,119 | A→G | 100% | S165S (TCA→TCG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,126 | 2 bp→TC | 100% | coding (502‑503/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,134 | C→T | 100% | S170S (TCC→TCT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,138 | G→A | 100% | G172S (GGC→AGC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,145 | A→G | 100% | E174G (GAA→GGA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,147 | G→A | 100% | A175T (GCG→ACG) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,156 | G→A | 100% | A178T (GCA→ACA) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,173 | 3 bp→ATC | 100% | coding (549‑551/2325 nt) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,185 | C→T | 100% | A187A (GCC→GCT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,188 | A→C | 100% | A188A (GCA→GCC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,191 | C→T | 100% | A189A (GCC→GCT) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| RA | 842,208 | A→G | 100% | N195S (AAC→AGC) | EK12AG100_RS23550 → | short‑chain dehydrogenase |
| MC JC | 932,107 | Δ168 bp | 100% | [EK12AG100_RS04715] | [EK12AG100_RS04715] | |
| RA | 1,011,377 | A→G | 100% | N158D (AAT→GAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,082,666 | T→G | 100% | L277L (CTT→CTG) | EK12AG100_RS05400 → | cytochrome d ubiquinol oxidase subunit II |
| RA | 1,104,475 | A→G | 100% | N46S (AAC→AGC) | torD → | molecular chaperone TorD |
| RA | 1,123,847 | G→A | 100% | intergenic (+494/‑49) | putP → / → EK12AG100_RS05615 | sodium/proline symporter PutP/FTR1 family protein |
| RA | 1,154,267 | 2 bp→CC | 100% | coding (865‑866/2544 nt) | mdoH → | glucans biosynthesis glucosyltransferase MdoH |
| RA | 1,212,376 | G→A | 100% | P179L (CCG→CTG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,232,520 | G→A | 100% | T156T (ACC→ACT) | phoP ← | two‑component system response regulator PhoP |
| RA | 1,328,213 | T→A | 100% | Y271N (TAT→AAT) | oppA → | oligopeptide ABC transporter substrate‑binding protein OppA |
| RA | 1,332,957 | G→T | 100% | A325S (GCC→TCC) | oppF → | murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
| RA | 1,334,905 | C→T | 100% | intergenic (‑39/‑104) | cls ← / → EK12AG100_RS25580 | cardiolipin synthase/YciY family protein |
| RA | 1,357,280 | 2 bp→TC | 100% | coding (12‑13/2598 nt) | topA → | type I DNA topoisomerase |
| RA | 1,385,080 | C→T | 100% | C110Y (TGT→TAT) | puuP ← | putrescine/proton symporter PuuP |
| RA | 1,518,134 | A→C | 100% | E217A (GAG→GCG) | EK12AG100_RS07620 → | ABC transporter permease |
| RA | 1,595,365 | A→C | 100% | pseudogene (466/1323 nt) | hipA ← | type II toxin‑antitoxin system serine/threonine protein kinase toxin HipA |
| RA | 1,632,901 | T→C | 100% | I11I (ATT→ATC) | ydfZ → | putative selenium delivery protein YdfZ |
| RA | 1,636,308 | T→C | 31.0% | intergenic (‑369/‑236) | EK12AG100_RS08145 ← / → EK12AG100_RS25635 | MHS family MFS transporter/Rac prophage; protein YnaM |
| RA | 1,636,366 | A→G | 42.9% | intergenic (‑427/‑178) | EK12AG100_RS08145 ← / → EK12AG100_RS25635 | MHS family MFS transporter/Rac prophage; protein YnaM |
| RA | 1,636,389 | G→A | 45.4% | intergenic (‑450/‑155) | EK12AG100_RS08145 ← / → EK12AG100_RS25635 | MHS family MFS transporter/Rac prophage; protein YnaM |
| RA | 1,636,424 | T→C | 50.0% | intergenic (‑485/‑120) | EK12AG100_RS08145 ← / → EK12AG100_RS25635 | MHS family MFS transporter/Rac prophage; protein YnaM |
| RA | 1,636,491 | A→G | 53.2% | intergenic (‑552/‑53) | EK12AG100_RS08145 ← / → EK12AG100_RS25635 | MHS family MFS transporter/Rac prophage; protein YnaM |
| RA | 1,636,567 | A→T | 53.1% | T8T (ACA→ACT) | EK12AG100_RS25635 → | Rac prophage; protein YnaM |
| RA | 1,636,570 | T→G | 53.4% | S9S (TCT→TCG) | EK12AG100_RS25635 → | Rac prophage; protein YnaM |
| RA | 1,636,603 | C→T | 51.8% | A20A (GCC→GCT) | EK12AG100_RS25635 → | Rac prophage; protein YnaM |
| RA | 1,636,877 | A→C | 54.0% | K51T (AAA→ACA) | EK12AG100_RS08150 → | cold shock protein YdfK |
| RA | 1,637,283 | A→G | 47.0% | Q3R (CAA→CGA) | EK12AG100_RS08155 → | recombinase family protein |
| RA | 1,637,578 | G→T | 53.6% | G101G (GGG→GGT) | EK12AG100_RS08155 → | recombinase family protein |
| RA | 1,637,722 | A→T | 54.7% | P149P (CCA→CCT) | EK12AG100_RS08155 → | recombinase family protein |
| RA | 1,637,751 | C→T | 53.0% | A159V (GCG→GTG) | EK12AG100_RS08155 → | recombinase family protein |
| RA | 1,638,293 | C→T | 46.6% | D83N (GAC→AAC) | EK12AG100_RS08160 ← | tail fiber assembly protein |
| RA | 1,638,677 | T→C | 17.0% | A275A (GCA→GCG) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,680 | A→G | 15.6% | H274H (CAT→CAC) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,683 | C→T | 13.1% | A273A (GCG→GCA) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,686 | G→A | 12.8% | G272G (GGC→GGT) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,713 | C→T | 7.5% | S263S (TCG→TCA) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,914 | A→G | 5.2% | H196H (CAT→CAC) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,917 | G→T | 6.7% | T195T (ACC→ACA) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,923 | C→T | 12.2% | A193A (GCG→GCA) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,947 | G→A | 18.6% | T185T (ACC→ACT) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,950 | T→G | 17.3% | G184G (GGA→GGC) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,976 | C→T | 21.2% | E176K (GAA→AAA) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,638,989 | C→T | 22.1% | T171T (ACG→ACA) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,016 | G→A | 23.7% | H162H (CAC→CAT) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,046 | T→C | 26.5% | L152L (TTA→TTG) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,067 | G→A | 25.7% | P145P (CCC→CCT) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,070 | C→T | 25.9% | K144K (AAG→AAA) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,124 | A→G | 26.9% | V126V (GTT→GTC) ‡ | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,125 | A→G | 26.9% | V126A (GTT→GCT) ‡ | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,142 | T→A | 27.0% | A120A (GCA→GCT) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,159 | T→C | 27.6% | T115A (ACT→GCT) | EK12AG100_RS08165 ← | tail fiber protein |
| RA | 1,639,728 | T→C | 100% | E98E (GAA→GAG) | EK12AG100_RS08170 ← | DNA‑packaging protein |
| RA | 1,639,737 | G→A | 26.6% | D95D (GAC→GAT) | EK12AG100_RS08170 ← | DNA‑packaging protein |
| RA | 1,639,799 | C→T | 100% | A75T (GCA→ACA) | EK12AG100_RS08170 ← | DNA‑packaging protein |
| RA | 1,639,813 | C→A | 14.9% | R70L (CGG→CTG) | EK12AG100_RS08170 ← | DNA‑packaging protein |
| RA | 1,639,827 | T→C | 14.8% | E65E (GAA→GAG) | EK12AG100_RS08170 ← | DNA‑packaging protein |
| RA | 1,640,036 | A→C | 100% | intergenic (‑15/‑374) | EK12AG100_RS08170 ← / → EK12AG100_RS08175 | DNA‑packaging protein/YlcI/YnfO family protein |
| RA | 1,640,138 | T→C | 100% | intergenic (‑117/‑272) | EK12AG100_RS08170 ← / → EK12AG100_RS08175 | DNA‑packaging protein/YlcI/YnfO family protein |
| RA | 1,640,157 | C→T | 100% | intergenic (‑136/‑253) | EK12AG100_RS08170 ← / → EK12AG100_RS08175 | DNA‑packaging protein/YlcI/YnfO family protein |
| RA | 1,647,333 | T→A | 100% | Q209L (CAG→CTG) | EK12AG100_RS08235 ← | DUF968 domain‑containing protein |
| RA | 1,655,985 | C→T | 100% | pseudogene (781/1158 nt) | EK12AG100_RS25655 → | site‑specific integrase |
| RA | 1,724,790 | T→C | 100% | F38L (TTT→CTT) | EK12AG100_RS08655 → | DUF1656 domain‑containing protein |
| RA | 1,780,369 | T→A | 100% | C377S (TGT→AGT) | EK12AG100_RS08915 → | acyl CoA:acetate/3‑ketoacid CoA transferase |
| MC JC | 1,870,601 | Δ182 bp | 100% | [EK12AG100_RS09385] | [EK12AG100_RS09385] | |
| RA | 1,898,675 | C→T | 100% | P12L (CCC→CTC) | pabB → | aminodeoxychorismate synthase component 1 |
| RA | 2,043,369 | A→C | 100% | D319A (GAC→GCC) | msrP → | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |
| RA | 2,123,905 | A→G | 100% | L196L (TTG→CTG) | EK12AG100_RS10745 ← | UDP‑glucose‑‑undecaprenyl‑phosphate glucose‑1‑phosphate transferase |
| RA | 2,145,534 | A→G | 100% | L117L (CTT→CTC) | EK12AG100_RS10840 ← | uridine kinase |
| RA | 2,176,382 | T→C | 100% | Q277Q (CAA→CAG) | EK12AG100_RS10970 ← | galactitol permease IIC component |
| RA | 2,234,712 | G→T | 100% | intergenic (+64/‑66) | EK12AG100_RS11230 → / → cdd | CidB/LrgB family autolysis modulator/cytidine deaminase |
| RA | 2,236,543 | T→C | 100% | pseudogene (10/240 nt) | EK12AG100_RS11245 → | DUF2542 family protein |
| JC | 2,242,224 | +58 bp | 100% | intergenic (‑1/+2) | mglA ← / ← mglB | galactose/methyl galactoside ABC transporter ATP‑binding protein MglA/galactose/glucose ABC transporter substrate‑binding protein MglB |
| RA | 2,245,123 | T→C | 100% | R241G (AGG→GGG) | EK12AG100_RS11285 ← | DUF418 family protein |
| RA | 2,250,010 | C→A | 100% | D467Y (GAC→TAC) | lysP ← | lysine‑specific permease |
| RA | 2,393,995 | A→G | 100% | F129F (TTT→TTC) | nuoN ← | NADH‑quinone oxidoreductase subunit NuoN |
| RA | 2,407,278 | A→G | 100% | L71S (TTG→TCG) | EK12AG100_RS12000 ← | NADH‑quinone oxidoreductase subunit NuoB |
| RA | 2,455,265 | 2 bp→GG | 100% | pseudogene (2612‑2613/2646 nt) | yfcU ← | fimbrial usher protein YfcU |
| RA | 2,473,744 | G→C | 18.8% | pseudogene (54/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,750 | C→T | 19.6% | pseudogene (60/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,753 | G→A | 20.1% | pseudogene (63/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,767 | T→C | 22.9% | pseudogene (77/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,777 | T→C | 24.2% | pseudogene (87/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,780 | A→G | 25.2% | pseudogene (90/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,801 | G→A | 26.9% | pseudogene (111/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,811 | A→G | 26.6% | pseudogene (121/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,849 | A→G | 27.6% | pseudogene (159/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,855 | T→C | 28.8% | pseudogene (165/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,858 | G→A | 27.8% | pseudogene (168/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,861 | G→T | 27.2% | pseudogene (171/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,864 | G→A | 27.0% | pseudogene (174/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,869 | T→C | 26.9% | pseudogene (179/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,879 | G→A | 27.4% | pseudogene (189/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,882 | C→A | 27.4% | pseudogene (192/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,883 | T→A | 28.1% | pseudogene (193/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,886 | C→A | 27.8% | pseudogene (196/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,895 | A→G | 27.8% | pseudogene (205/291 nt) | EK12AG100_RS12330 → | tail fiber assembly protein |
| RA | 2,473,977 | A→C | 21.0% | pseudogene (287/291 nt) T139T (ACT→ACG) |
EK12AG100_RS12330 → EK12AG100_RS12335 ← |
tail fiber assembly protein tail fiber assembly protein |
| RA | 2,474,007 | A→T | 12.6% | T129T (ACT→ACA) | EK12AG100_RS12335 ← | tail fiber assembly protein |
| RA | 2,474,013 | G→A | 12.2% | V127V (GTC→GTT) | EK12AG100_RS12335 ← | tail fiber assembly protein |
| RA | 2,474,019 | C→T | 10.7% | E125E (GAG→GAA) | EK12AG100_RS12335 ← | tail fiber assembly protein |
| RA | 2,474,028 | G→T | 10.7% | D122E (GAC→GAA) | EK12AG100_RS12335 ← | tail fiber assembly protein |
| RA | 2,484,484 | G→A | 100% | S190L (TCA→TTA) | emrY ← | multidrug efflux MFS transporter permease subunit EmrY |
| RA | 2,501,268 | C→A | 100% | intergenic (‑97/‑279) | EK12AG100_RS12470 ← / → EK12AG100_RS12475 | alanine transaminase/two‑component system sensor histidine kinase YpdA |
| RA | 2,517,333 | T→C | 100% | L43L (TTG→CTG) | EK12AG100_RS12545 → | IS4‑like element IS421 family transposase |
| RA | 2,549,680 | A→T | 100% | E44D (GAA→GAT) | murP → | PTS N‑acetylmuramic acid transporter subunit IIBC |
| RA | 2,574,113 | C→T | 100% | E147E (GAG→GAA) | EK12AG100_RS12855 ← | NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase |
| RA | 2,583,288 | T→C | 100% | V461A (GTA→GCA) | narQ → | nitrate/nitrite two‑component system sensor histidine kinase NarQ |
| RA | 2,658,133 | G→A | 100% | R59C (CGT→TGT) | iscR ← | Fe‑S cluster assembly transcriptional regulator IscR |
| MC JC | 2,694,580 | Δ128 bp | 100% | [EK12AG100_RS25720] | [EK12AG100_RS25720] | |
| RA | 2,741,904 | G→A | 100% | H107Y (CAC→TAC) | rimM ← | ribosome maturation factor RimM |
| RA | 2,771,251 | A→G | 100% | S544G (AGT→GGT) | EK12AG100_RS13785 → | hypothetical protein |
| RA | 2,783,895 | G→A | 100% | intergenic (+157/‑51) | EK12AG100_RS25740 → / → EK12AG100_RS25255 | alpha amylase/alpha amylase |
| RA | 2,863,759 | A→G | 100% | pseudogene (97/993 nt) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,876,939 | C→T | 100% | L138L (TTG→TTA) | cas5e ← | type I‑E CRISPR‑associated protein Cas5/CasD |
| RA | 2,923,076 | A→C | 100% | G155G (GGA→GGC) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 3,021,900:1 | +T | 100% | pseudogene (1246/1400 nt) | xanQ → | xanthine/proton symporter XanQ |
| RA | 3,204,060:1 | +G | 100% | pseudogene (177/605 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,272,414 | T→A | 100% | D207E (GAT→GAA) | garD → | galactarate dehydratase |
| RA | 3,292,993 | A→G | 100% | M25V (ATG→GTG) | yraP → | divisome‑associated lipoprotein YraP |
| RA | 3,301,862 | Δ2 bp | 100% | coding (467‑468/1245 nt) | EK12AG100_RS16405 ← | tryptophan permease |
| RA | 3,301,866 | A→T | 100% | I155N (ATT→AAT) | EK12AG100_RS16405 ← | tryptophan permease |
| RA | 3,326,255 | T→G | 100% | Y261D (TAT→GAT) | dacB → | serine‑type D‑Ala‑D‑Ala carboxypeptidase |
| RA | 3,373,942 | T→C | 100% | intergenic (‑10/+385) | sspA ← / ← rpsI | stringent starvation protein A/30S ribosomal protein S9 |
| RA | 3,384,553 | G→T | 100% | P50T (CCG→ACG) | aaeB ← | p‑hydroxybenzoic acid efflux pump subunit AaeB |
| RA | 3,408,201 | T→G | 100% | pseudogene (37/885 nt) | yhdJ → | adenine‑specific DNA‑methyltransferase |
| RA | 3,430,412 | T→C | 100% | L71L (TTA→CTA) | EK12AG100_RS17055 → | peptide deformylase |
| RA | 3,470,937 | C→T | 100% | R43K (AGA→AAA) | rpsL ← | 30S ribosomal protein S12 |
| RA | 3,482,687 | A→G | 100% | Y19C (TAC→TGC) | crp → | cAMP‑activated global transcriptional regulator CRP |
| RA | 3,483,014 | T→C | 100% | I128T (ATT→ACT) | crp → | cAMP‑activated global transcriptional regulator CRP |
| RA | 3,493,618 | A→G | 100% | D35G (GAC→GGC) | nirC → | nitrite transporter NirC |
| RA | 3,503,761 | T→C | 100% | N30D (AAC→GAC) | EK12AG100_RS17515 ← | membrane protein |
| RA | 3,507,978 | T→C | 100% | V293V (GTA→GTG) | EK12AG100_RS17545 ← | transcriptional regulator |
| RA | 3,551,559 | 2 bp→GT | 100% | coding (1963‑1964/2706 nt) | malT → | HTH‑type transcriptional regulator MalT |
| RA | 3,556,874 | A→G | 100% | V82A (GTC→GCC) | EK12AG100_RS17745 ← | DeoR/GlpR family transcriptional regulator |
| RA | 3,643,483 | T→G | 100% | H224Q (CAT→CAG) | gorA → | glutathione‑disulfide reductase |
| RA | 3,643,941 | T→C | 100% | V377A (GTG→GCG) | gorA → | glutathione‑disulfide reductase |
| RA | 3,704,396 | A→G | 100% | intergenic (‑178/+565) | dppA ← / ← EK12AG100_RS23155 | dipeptide ABC transporter substrate‑binding protein DppA/RtT sRNA |
| RA | 3,704,460 | A→C | 100% | intergenic (‑242/+501) | dppA ← / ← EK12AG100_RS23155 | dipeptide ABC transporter substrate‑binding protein DppA/RtT sRNA |
| RA | 3,715,942 | A→G | 100% | intergenic (‑385/‑49) | EK12AG100_RS18455 ← / → EK12AG100_RS18460 | DUF3053 domain‑containing protein/HTH‑type transcriptional regulator |
| RA | 3,717,968 | T→C | 100% | L259L (CTT→CTC) | EK12AG100_RS25320 → | IS3‑like element IS150 family transposase |
| RA | 3,721,689 | G→T | 100% | A48E (GCG→GAG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,724,623:1 | +C | 100% | coding (1261/1353 nt) | xylB ← | xylulokinase |
| RA | 3,725,952 | 2 bp→CC | 100% | intergenic (‑69/+2) | xylB ← / ← xylA | xylulokinase/xylose isomerase |
| RA | 3,727,072 | T→C | 100% | pseudogene (206/1323 nt) | xylA ← | xylose isomerase |
| RA | 3,766,256 | C→T | 100% | intergenic (+64/+499) | EK12AG100_RS18690 → / ← EK12AG100_RS18695 | hypothetical protein/HlyD family secretion protein |
| RA | 3,767,051 | T→C | 100% | M281V (ATG→GTG) | EK12AG100_RS18695 ← | HlyD family secretion protein |
| RA | 3,769,682:1 | +G | 92.9% | pseudogene (890/1913 nt) | EK12AG100_RS18705 → | PTS mannitol transporter subunit IICBA |
| RA | 3,769,687 | T→C | 100% | pseudogene (895/1913 nt) | EK12AG100_RS18705 → | PTS mannitol transporter subunit IICBA |
| RA | 3,799,456 | T→G | 100% | K38N (AAA→AAC) | waaO ← | lipopolysaccharide 3‑alpha‑galactosyltransferase |
| RA | 3,812,391 | Δ1 bp | 100% | coding (671/717 nt) | EK12AG100_RS18930 ← | ribonuclease PH |
| RA | 3,813,679 | T→C | 100% | T164T (ACT→ACC) | EK12AG100_RS18935 → | YicC family protein |
| RA | 3,862,813 | G→A | 100% | intergenic (‑28/+168) | EK12AG100_RS19170 ← / ← ibpB | putative transporter/heat shock chaperone IbpB |
| RA | 3,862,823 | A→G | 100% | intergenic (‑38/+158) | EK12AG100_RS19170 ← / ← ibpB | putative transporter/heat shock chaperone IbpB |
| RA | 3,894,419 | A→G | 100% | I134M (ATA→ATG) | EK12AG100_RS19335 → | hypothetical protein |
| RA | 3,917,872 | 2 bp→CA | 100% | coding (691‑692/816 nt) | atpB ← | F0F1 ATP synthase subunit A |
| RA | 3,925,308 | T→C | 100% | T270A (ACG→GCG) | viaA ← | ATPase RavA stimulator ViaA |
| RA | 3,925,375 | T→C | 100% | T247T (ACA→ACG) | viaA ← | ATPase RavA stimulator ViaA |
| RA | 4,150,309 | A→G | 100% | pseudogene (1012/1152 nt) | argE ← | acetylornithine deacetylase |
| RA | 4,190,469 | G→T | 100% | A70D (GCT→GAT) | thiE ← | thiamine phosphate synthase |
| RA | 4,212,143 | T→G | 100% | Y65D (TAT→GAT) | aceB → | malate synthase A |
| RA | 4,292,533 | T→C | 100% | intergenic (+266/+376) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,292,663 | A→G | 23.1% | intergenic (+396/+246) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,292,664 | A→C | 23.2% | intergenic (+397/+245) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,292,741 | C→T | 73.9% | intergenic (+474/+168) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,292,759 | C→T | 22.2% | intergenic (+492/+150) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,292,776 | A→G | 17.0% | intergenic (+509/+133) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,292,777 | A→C | 15.9% | intergenic (+510/+132) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,292,853:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← EK12AG100_RS21205 | glutamate/aspartate:proton symporter GltP/sel1 repeat family protein |
| RA | 4,303,525 | T→C | 100% | N250D (AAT→GAT) | alsK ← | allose kinase |
| RA | 4,303,694 | C→T | 100% | L193L (CTG→CTA) | alsK ← | allose kinase |
| RA | 4,322,117 | T→C | 100% | N33S (AAC→AGC) | yjdN ← | VOC family metalloprotein YjdN |
| RA | 4,328,363 | T→C | 100% | L463L (CTT→CTC) | EK12AG100_RS21375 → | glycine betaine/L‑proline transporter ProP |
| RA | 4,334,583 | Δ1 bp | 100% | intergenic (‑181/+145) | EK12AG100_RS21405 ← / ← adiA | DNA‑binding transcriptional activator AdiY/arginine decarboxylase |
| RA | 4,347,265 | T→G | 100% | D291A (GAC→GCC) | dcuS ← | two‑component system sensor histidine kinase DcuS |
| RA | 4,434,364 | T→C | 100% | pseudogene (184/939 nt) | EK12AG100_RS21930 → | hypothetical protein |
| RA | 4,443,520 | T→A | 100% | S979T (TCC→ACC) | tamB → | autotransporter assembly complex protein TamB |
| RA | 4,470,374 | T→C | 100% | R52G (AGA→GGA) | bdcA ← | SDR family oxidoreductase |
| RA | 4,471,967 | C→T | 100% | F19F (TTC→TTT) | EK12AG100_RS22110 → | hypothetical protein |
| RA | 4,473,079 | A→G | 100% | N390S (AAC→AGC) | EK12AG100_RS22110 → | hypothetical protein |
| RA | 4,485,490 | T→C | 100% | K350E (AAA→GAA) | EK12AG100_RS22160 ← | DUF853 domain‑containing protein |
| RA | 4,506,712 | G→T | 100% | intergenic (+105/+452) | EK12AG100_RS25865 → / ← EK12AG100_RS22290 | hypothetical protein/Fe(3+) dicitrate ABC transporter ATP‑binding protein FecE |
| RA | 4,528,883 | G→T | 100% | intergenic (‑99/+28) | EK12AG100_RS25395 ← / ← EK12AG100_RS22405 | hypothetical protein/class I SAM‑dependent methyltransferase |
| RA | 4,543,075 | T→C | 100% | I502I (ATT→ATC) | fimD → | fimbrial biogenesis usher protein FimD |
| RA | 4,633,399 | C→G | 100% | P77R (CCC→CGC) | creC → | two‑component system sensor histidine kinase CreC |
| RA | 4,634,714 | A→G | 100% | L21L (TTA→TTG) | creD → | cell envelope integrity protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_LN832404 | 804284 | 841655 | 37372 | 79 [0] | [40] 41 | EK12AG100_RS03995–[EK12AG100_RS23550] | EK12AG100_RS03995,EK12AG100_RS04000,EK12AG100_RS04005,EK12AG100_RS04010,EK12AG100_RS04015,EK12AG100_RS04020,EK12AG100_RS04025,EK12AG100_RS04035,EK12AG100_RS04040,EK12AG100_RS04045,bet,EK12AG100_RS04055,EK12AG100_RS25515,EK12AG100_RS25520,EK12AG100_RS25525,EK12AG100_RS04070,EK12AG100_RS04075,EK12AG100_RS04080,EK12AG100_RS04085,EK12AG100_RS04100,EK12AG100_RS04105,EK12AG100_RS04110,EK12AG100_RS04115,EK12AG100_RS04120,EK12AG100_RS25015,EK12AG100_RS04130,EK12AG100_RS04135,EK12AG100_RS04140,EK12AG100_RS04145,EK12AG100_RS23540,EK12AG100_RS04150,EK12AG100_RS04155,EK12AG100_RS04160,EK12AG100_RS04165,EK12AG100_RS04170,EK12AG100_RS04175,EK12AG100_RS23545,EK12AG100_RS04180,EK12AG100_RS04185,rzoD,EK12AG100_RS04195,EK12AG100_RS04200,EK12AG100_RS04205,EK12AG100_RS04210,EK12AG100_RS04215,EK12AG100_RS04220,EK12AG100_RS04225,EK12AG100_RS04230,EK12AG100_RS04235,EK12AG100_RS04240,EK12AG100_RS04245,EK12AG100_RS04250,EK12AG100_RS04255,EK12AG100_RS04260,EK12AG100_RS04265,EK12AG100_RS04270,EK12AG100_RS04275,EK12AG100_RS04280,EK12AG100_RS04285,EK12AG100_RS04290,[EK12AG100_RS23550] |
| * | * | ÷ | NZ_LN832404 | 842254 | 849714 | 7461 | 42 [40] | [0] 77 | [EK12AG100_RS23550]–EK12AG100_RS04330 | [EK12AG100_RS23550],EK12AG100_RS04310,EK12AG100_RS04315,EK12AG100_RS04325,EK12AG100_RS04330 |
| * | * | ÷ | NZ_LN832404 | 1238700 | 1238887 | 188 | 41 [40] | [40] 41 | EK12AG100_RS06230 | NADP‑dependent isocitrate dehydrogenase |
| * | * | ÷ | NZ_LN832404 | 1438028–1438076 | 1438690 | 615–663 | 42 [40] | [39] 41 | [ttcA] | [ttcA] |
| * | * | ÷ | NZ_LN832404 | 1982331 | 1982527 | 197 | 93 [0] | [40] 41 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| * | * | ÷ | NZ_LN832404 | 2561422 | 2561821 | 400 | 41 [40] | [40] 41 | [EK12AG100_RS12790]–[eutA] | [EK12AG100_RS12790],EK12AG100_RS25715,[eutA] |
| * | * | ÷ | NZ_LN832404 | 3126619–3127643 | 3127980 | 338–1362 | 41 [40] | [0] 81 | [EK12AG100_RS15510]–[EK12AG100_RS15515] | [EK12AG100_RS15510],[EK12AG100_RS15515] |
| * | * | ÷ | NZ_LN832404 | 3420319–3420746 | 3421039–3420751 | 6–721 | 42 [40] | [39] 41 | [EK12AG100_RS17000] | [EK12AG100_RS17000] |
| * | * | ÷ | NZ_LN832404 | 3940731–3942239 | 3942239 | 1–1509 | 41 [40] | [40] 41 | EK12AG100_RS19545 | 23S ribosomal RNA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_LN832404 | 19796 = | NA (NA) | 91 (0.920) | 80/566 | NT | 98.9% | intergenic (+176/+15) | nhaR/EK12AG100_RS00100 | transcriptional activator NhaR/IS1‑like element IS1A family transposase |
| ? | NZ_LN832404 | = 889908 | 1 (0.010) | coding (469/747 nt) | glnH | glutamine ABC transporter substrate‑binding protein GlnH | |||||
| * | ? | NZ_LN832404 | = 20562 | NA (NA) | 98 (0.990) | 88/564 | NT | 100% | intergenic (‑54/+253) | EK12AG100_RS00100/rpsT | IS1‑like element IS1A family transposase/30S ribosomal protein S20 |
| ? | NZ_LN832404 | 889900 = | 0 (0.000) | coding (477/747 nt) | glnH | glutamine ABC transporter substrate‑binding protein GlnH | |||||
| * | ? | NZ_LN832404 | = 804283 | 0 (0.000) | 70 (0.750) | 66/536 | NT | 100% | intergenic (‑61/+74) | EK12AG100_RS03990/EK12AG100_RS03995 | putative acyl‑CoA thioester hydrolase/tyrosine‑type recombinase/integrase |
| ? | NZ_LN832404 | 849715 = | 0 (0.000) | intergenic (‑766/+90) | EK12AG100_RS04330/EK12AG100_RS04335 | AAA family ATPase/kinase inhibitor | |||||
| * | ? | NZ_LN832404 | = 1423459 | NA (NA) | 115 (1.160) | 103/566 | NT | 100% | intergenic (+146/‑127) | EK12AG100_RS07185/EK12AG100_RS07190 | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_LN832404 | = 1998559 | 0 (0.000) | intergenic (‑264/‑32) | uvrY/EK12AG100_RS25670 | UvrY/SirA/GacA family response regulator transcription factor/hypothetical protein | |||||
| * | ? | NZ_LN832404 | 1471564 = | NA (NA) | 99 (1.000) | 83/566 | NT | 99.0% | pseudogene (2519/2526 nt) | EK12AG100_RS07400 | autotransporter domain‑containing protein |
| ? | NZ_LN832404 | 1498729 = | 1 (0.010) | intergenic (‑4/‑213) | EK12AG100_RS07510/EK12AG100_RS07515 | LysR family transcriptional regulator/VOC family protein | |||||
| * | ? | NZ_LN832404 | = 1472893 | NA (NA) | 115 (1.160) | 99/564 | NT | 100% | intergenic (‑45/‑51) | EK12AG100_RS07405/EK12AG100_RS25610 | IS3‑like element IS2 family transposase/phage tail protein |
| ? | NZ_LN832404 | = 1498734 | 0 (0.000) | intergenic (‑9/‑208) | EK12AG100_RS07510/EK12AG100_RS07515 | LysR family transcriptional regulator/VOC family protein | |||||
| * | ? | NZ_LN832404 | = 1982330 | 0 (0.000) | 92 (0.930) | 78/566 | NT | 100% | intergenic (‑297/‑359) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_LN832404 | = 2292989 | NA (NA) | intergenic (‑32/‑387) | EK12AG100_RS11490/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_LN832404 | 1998556 = | 0 (0.000) | 94 (0.950) | 84/566 | NT | 100% | intergenic (‑261/‑35) | uvrY/EK12AG100_RS25670 | UvrY/SirA/GacA family response regulator transcription factor/hypothetical protein |
| ? | NZ_LN832404 | = 2292989 | NA (NA) | intergenic (‑32/‑387) | EK12AG100_RS11490/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_LN832404 | 3127981 = | 0 (0.000) | 46 (0.810) +121 bp |
40/324 | NT | 100% | pseudogene (941/942 nt) | EK12AG100_RS15515 | lipopolysaccharide biosynthesis protein |
| ? | NZ_LN832404 | 3648543 = | NA (NA) | coding (740/783 nt) | EK12AG100_RS18170 | hypothetical protein | |||||
| * | ? | NZ_LN832404 | 3935133 = | 0 (0.000) | 100 (1.010) | 90/566 | NT | 100% | coding (395/993 nt) | rbsR | ribose operon transcriptional repressor RbsR |
| ? | NZ_LN832404 | = 4495985 | NA (NA) | intergenic (+11/+166) | EK12AG100_RS22210/EK12AG100_RS23025 | IS3‑like element IS2 family transposase/phosphoethanolamine transferase | |||||
| * | ? | NZ_LN832404 | = 3935137 | 0 (0.000) | 106 (1.070) | 99/566 | NT | 100% | coding (399/993 nt) | rbsR | ribose operon transcriptional repressor RbsR |
| ? | NZ_LN832404 | 4494655 = | NA (NA) | intergenic (+241/‑46) | EK12AG100_RS22200/EK12AG100_RS22210 | DUF4102 domain‑containing protein/IS3‑like element IS2 family transposase | |||||
| * | ? | NZ_LN832404 | = 4381837 | 86 (0.870) | 8 (0.080) | 8/564 | NT | 8.5% | intergenic (+22/‑30) | yjeM/EK12AG100_RS21635 | glutamate/gamma‑aminobutyrate family transporter YjeM/hypothetical protein |
| ? | NZ_LN832404 | 4494656 = | NA (NA) | intergenic (+242/‑45) | EK12AG100_RS22200/EK12AG100_RS22210 | DUF4102 domain‑containing protein/IS3‑like element IS2 family transposase | |||||
| * | ? | NZ_LN832404 | 4539156 = | 85 (0.860) | 88 (0.920) | 80/548 | NT | 55.5% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA |
| ? | NZ_LN832404 | 4539470 = | 59 (0.610) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA | |||||
| * | ? | NZ_LN832404 | = 4539164 | 85 (0.860) | 82 (0.850) | 73/548 | NT | 53.7% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA |
| ? | NZ_LN832404 | = 4539460 | 59 (0.610) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA | |||||