mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 28 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 3,440,377 | 0 | A | C | 63.2% | 0.7 / 12.5 | 22 | Q29P (CAG→CCG) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 3,440,363 | 0 | A | C | 61.9% | ‑5.5 / 10.3 | 23 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 994,235 | 0 | T | G | 59.3% | ‑5.5 / 11.8 | 27 | R54R (CGT→CGG) | CJ019_00938 | hypothetical protein |
| * | ACB122 | 319,120 | 0 | C | G | 57.1% | 12.4 / 26.8 | 22 | P554P (CCG→CCC) | CJ019_00291 | hypothetical protein |
| * | ACB122 | 5,262,909 | 0 | A | C | 55.6% | 6.9 / 14.6 | 20 | intergenic (+9/+27) | uacT_2/radA | Uric acid transporter UacT/DNA repair protein RadA |
| * | ACB122 | 5,379,210 | 0 | A | C | 55.6% | 3.2 / 14.5 | 18 | intergenic (+35/‑28) | glcA/lldD | Glycolate permease GlcA/L‑lactate dehydrogenase |
| * | ACB122 | 3,440,367 | 0 | T | G | 55.0% | 2.0 / 14.0 | 22 | W26G (TGG→GGG) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 3,586,413 | 0 | A | C | 54.2% | 5.8 / 18.5 | 24 | Q131P (CAG→CCG) | CJ019_03399 | hypothetical protein |
| * | ACB122 | 3,210,881 | 0 | T | G | 53.6% | 22.7 / 36.2 | 31 | V204G (GTC→GGC) | oprJ_2 | Outer membrane protein OprJ |
| * | ACB122 | 2,856,882 | 0 | C | G | 53.3% | 1.3 / 10.3 | 15 | A295A (GCC→GCG) | hdfR_4 | HTH‑type transcriptional regulator HdfR |
| * | ACB122 | 4,880,350 | 0 | A | C | 53.3% | 0.7 / 18.8 | 30 | G100G (GGT→GGG) | CJ019_04574 | hypothetical protein |
| * | ACB122 | 3,995,418 | 0 | T | G | 52.9% | 3.8 / 11.4 | 17 | intergenic (+90/‑44) | dmoA_3/allE | Dimethyl‑sulfide monooxygenase/(S)‑ureidoglycine aminohydrolase |
| * | ACB122 | 4,500,227 | 0 | A | C | 46.4% | 4.4 / 10.0 | 28 | G56G (GGT→GGG) | cysG_1 | Siroheme synthase |
| * | ACB122 | 2,780,706 | 0 | A | T | 42.3% | 16.0 / 11.5 | 26 | intergenic (+96/‑29) | ahpC_2/ahpF | Alkyl hydroperoxide reductase C/Alkyl hydroperoxide reductase subunit F |
| * | ACB122 | 1,584,539 | 0 | A | C | 40.0% | 20.3 / 11.0 | 35 | G137G (GGT→GGG) | rhaS_1 | HTH‑type transcriptional activator RhaS |
| * | ACB122 | 3,138,367 | 0 | T | G | 39.5% | 43.9 / 12.4 | 38 | F240V (TTT→GTT) | rbsC_2 | Ribose import permease protein RbsC |
| * | ACB122 | 4,807,809 | 0 | G | C | 35.0% | 100.1 / 15.1 | 62 | E70Q (GAA→CAA) | mcbC | Microcin B17‑processing protein McbC |
| * | ACB122 | 4,413,553 | 0 | A | C | 34.0% | 59.4 / 10.5 | 47 | I7L (ATC→CTC) | CJ019_04183 | hypothetical protein |
| * | ACB122 | 5,931,671 | 0 | A | C | 32.8% | 92.1 / 10.7 | 62 | T526P (ACC→CCC) | rbbA | Ribosome‑associated ATPase |
| * | ACB122 | 1,791,678 | 0 | T | G | 32.6% | 32.0 / 11.8 | 47 | L182R (CTG→CGG) | lpxB | Lipid‑A‑disaccharide synthase |