mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 512,643 | 0 | A | G | 50.4% | ‑4.4 / 184.0 | 123 | intergenic (+711/‑150) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| * | CP000730 | 111,512 | 0 | A | G | 41.7% | 44.5 / 79.3 | 72 | S194S (TCA→TCG) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 111,516 | 0 | C | A | 37.7% | 76.7 / 74.2 | 70 | Q196K (CAA→AAA) | USA300HOU_0110 | possible staphylococcal tandem lipoprotein |
| * | CP000730 | 110,660 | 0 | T | A | 20.5% | 175.8 / 42.8 | 73 | I173I (ATT→ATA) | USA300HOU_0109 | staphylococcal tandem lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 26 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 329202 = | 81 (1.220) | 6 (0.100) | 6/246 | 7.1 | 8.1% | intergenic (+70/+73) | USA300HOU_0295/USA300HOU_0296 | hypothetical membrane protein/hypothetical protein |
| ? | CP000730 | 329255 = | 61 (0.990) | intergenic (+123/+20) | USA300HOU_0295/USA300HOU_0296 | hypothetical membrane protein/hypothetical protein | |||||
| * | ? | CP000730 | = 515519 | NA (NA) | 7 (0.110) | 6/256 | 7.3 | NA | noncoding (814/2921 nt) | rrl1 | 23S ribosomal RNA |
| ? | CP000730 | = 515584 | NA (NA) | noncoding (879/2921 nt) | rrl1 | 23S ribosomal RNA | |||||
| * | ? | CP000730 | 1963216 = | 61 (0.920) | 6 (0.090) | 5/258 | 7.8 | 9.1% | intergenic (‑79/+244) | USA300HOU_1822/hemG | possible hydrolase/protoporphyrinogen oxidase |
| ? | CP000730 | 1963268 = | 61 (0.940) | intergenic (‑131/+192) | USA300HOU_1822/hemG | possible hydrolase/protoporphyrinogen oxidase | |||||
| * | ? | CP000730 | = 1713218 | 57 (0.860) | 4 (0.060) | 4/248 | 8.2 | 6.7% | coding (209/753 nt) | ycsF | possible lactam utilization protein |
| ? | CP000730 | = 1713265 | 58 (0.930) | coding (162/753 nt) | ycsF | possible lactam utilization protein | |||||
| * | ? | CP000730 | = 2405051 | 67 (1.010) | 4 (0.060) | 4/252 | 8.3 | 5.8% | coding (312/915 nt) | USA300HOU_2268 | UT family urea transporter |
| ? | CP000730 | = 2405065 | 67 (1.060) | coding (298/915 nt) | USA300HOU_2268 | UT family urea transporter | |||||
| * | ? | CP000730 | 2368663 = | 62 (0.930) | 5 (0.080) | 4/254 | 8.3 | 7.3% | intergenic (‑1780/+3778) | rpmC/pbuG | ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2 |
| ? | CP000730 | 2368705 = | 67 (1.050) | intergenic (‑1822/+3736) | rpmC/pbuG | ribosomal protein L29/NCS2 family nucleobase:cation symporter‑2 | |||||
| * | ? | CP000730 | = 693067 | 98 (1.470) | 6 (0.090) | 4/254 | 8.3 | 6.0% | intergenic (‑94/+81) | USA300HOU_0635/USA300HOU_0636 | possible replication initiation protein/hypothetical protein |
| ? | CP000730 | = 693085 | 96 (1.510) | intergenic (‑112/+63) | USA300HOU_0635/USA300HOU_0636 | possible replication initiation protein/hypothetical protein | |||||
| * | ? | CP000730 | = 1114106 | 67 (1.010) | 3 (0.050) | 3/232 | 8.4 | 5.1% | intergenic (+35/‑4) | USA300HOU_1045/USA300HOU_1046 | hypothetical membrane protein/hypothetical protein |
| ? | CP000730 | = 1114131 | 54 (0.930) | coding (22/105 nt) | USA300HOU_1046 | hypothetical protein | |||||
| * | ? | CP000730 | 368774 = | 75 (1.130) | 4 (0.060) | 4/256 | 8.4 | 5.5% | intergenic (+208/+70) | nagC/USA300HOU_0337 | possible transcriptional regulator/possible RpiR family transcriptional regulator |
| ? | CP000730 | 368825 = | 64 (1.000) | intergenic (+259/+19) | nagC/USA300HOU_0337 | possible transcriptional regulator/possible RpiR family transcriptional regulator | |||||
| * | ? | CP000730 | = 1873423 | 53 (0.800) | 4 (0.070) | 3/240 | 8.6 | 8.4% | intergenic (‑99/+651) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein |
| ? | CP000730 | = 1873461 | 40 (0.670) | intergenic (‑137/+613) | USA300HOU_1742/USA300HOU_1743 | M20 family peptidase/hypothetical protein | |||||