mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,293 | Δ1 bp | 100% | intergenic (+124/‑367) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 96,466 | T→G | 27.5% | intergenic (+107/‑86) | cynT → / → CJ019_00104 | Carbonic anhydrase 1/hypothetical protein |
| RA | 96,480 | T→G | 33.4% | intergenic (+121/‑72) | cynT → / → CJ019_00104 | Carbonic anhydrase 1/hypothetical protein |
| RA | 120,975 | Δ1 bp | 100% | intergenic (+272/+100) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 179,484 | T→C | 100% | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 356,383 | G→A | 12.7% | V50V (GTC→GTT) | lcdH_2 ← | L‑carnitine dehydrogenase |
| RA | 382,476 | A→C | 43.9% | E11A (GAG→GCG) | soxD → | Sarcosine oxidase subunit delta |
| RA | 515,063 | G→A | 45.2% | D236D (GAC→GAT) | mepM ← | Murein DD‑endopeptidase MepM |
| RA | 541,976 | C→T | 8.6% | D592D (GAC→GAT) | fusA → | Elongation factor G 1 |
| RA | 601,357 | C→T | 10.5% | P60S (CCT→TCT) | btuF → | Vitamin B12‑binding protein |
| RA | 620,951 | G→A | 7.8% | intergenic (‑33/+75) | CJ019_00589 ← / ← eutC | hypothetical protein/Ethanolamine ammonia‑lyase light chain |
| RA | 1,198,856 | A→T | 10.0% | intergenic (‑42/+48) | CJ019_01129 ← / ← CJ019_01130 | hypothetical protein/hypothetical protein |
| RA | 1,327,427 | C→T | 9.5% | R234W (CGG→TGG) | CJ019_01244 → | hypothetical protein |
| RA | 1,505,955 | A→G | 8.3% | intergenic (+271/‑481) | rsmI → / → mraZ | Ribosomal RNA small subunit methyltransferase I/Transcriptional regulator MraZ |
| RA | 1,589,731 | G→T | 8.4% | G112G (GGC→GGA) | dctD_3 ← | C4‑dicarboxylate transport transcriptionalregulatory protein DctD |
| RA | 1,637,682 | T→C | 8.5% | K39R (AAG→AGG) | lon_1 ← | Lon protease |
| RA | 1,670,685 | A→C | 36.8% | intergenic (+22/‑109) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,677,216 | G→A | 7.4% | V247I (GTC→ATC) | namA_2 → | NADPH dehydrogenase |
| RA | 1,718,463 | T→G | 32.0% | Q65P (CAG→CCG) | CJ019_01614 ← | hypothetical protein |
| RA | 1,791,678 | T→G | 34.3% | L182R (CTG→CGG) | lpxB → | Lipid‑A‑disaccharide synthase |
| RA | 1,830,632 | G→A | 7.3% | P65P (CCG→CCA) | CJ019_01746 → | hypothetical protein |
| RA | 1,834,908 | T→G | 37.1% | T38P (ACC→CCC) | ldhA ← | D‑lactate dehydrogenase |
| RA | 1,839,275 | G→T | 12.9% | L170L (CTG→CTT) | pfeS_2 → | Sensor protein PfeS |
| RA | 2,018,148 | C→A | 9.6% | R31S (CGT→AGT) | mshA_4 → | D‑inositol‑3‑phosphate glycosyltransferase |
| RA | 2,076,973 | G→A | 8.7% | L190L (CTG→CTA) | CJ019_01978 → | hypothetical protein |
| RA | 2,084,843 | C→T | 7.1% | A371V (GCG→GTG) | deaD → | ATP‑dependent RNA helicase DeaD |
| RA | 2,094,817 | T→G | 66.5% | Q183P (CAG→CCG) | CJ019_01995 ← | hypothetical protein |
| RA | 2,231,813 | A→C | 36.6% | G291G (GGT→GGG) | emrA_2 ← | Colistin resistance protein EmrA |
| RA | 2,491,272 | A→C | 44.4% | H33P (CAC→CCC) | iutA → | Ferric aerobactin receptor |
| RA | 2,605,842 | G→A | 10.2% | G575D (GGC→GAC) | CJ019_02463 → | hypothetical protein |
| RA | 2,642,546 | G→A | 11.8% | A136T (GCC→ACC) | ynhG → | putative L,D‑transpeptidase YnhG |
| RA | 3,021,386 | C→A | 7.9% | intergenic (+203/‑46) | hisC_6 → / → CJ019_02839 | Histidinol‑phosphate aminotransferase/hypothetical protein |
| RA | 3,024,446 | C→T | 10.5% | Y216Y (TAC→TAT) | mgtB → | Magnesium‑transporting ATPase, P‑type 1 |
| RA | 3,061,793 | G→A | 100% | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,072,630 | T→G | 28.3% | intergenic (‑308/+126) | CJ019_02884 ← / ← yabJ_2 | putative protein/2‑iminobutanoate/2‑iminopropanoate deaminase |
| RA | 3,134,642 | G→T | 12.1% | V168F (GTC→TTC) | CJ019_02952 → | hypothetical protein |
| RA | 3,157,749 | C→A | 9.8% | P68H (CCT→CAT) | CJ019_02972 → | hypothetical protein |
| RA | 3,267,810 | T→G | 28.8% | L171V (TTG→GTG) | eamA → | putative amino‑acid metabolite efflux pump |
| RA | 3,362,995 | T→A | 5.8% | L74Q (CTG→CAG) | CJ019_03161 → | hypothetical protein |
| RA | 3,440,343 | A→C | 100% | S18R (AGC→CGC) | CJ019_03266 → | hypothetical protein |
| RA | 3,440,348 | T→G | 53.5% | A19A (GCT→GCG) | CJ019_03266 → | hypothetical protein |
| RA | 3,667,362 | T→C | 8.9% | H84R (CAT→CGT) | pyrR_1 ← | Bifunctional protein PyrR |
| RA | 3,761,329 | A→C | 30.5% | E96A (GAG→GCG) | CJ019_03574 → | hypothetical protein |
| RA | 3,945,826 | C→A | 8.4% | K123N (AAG→AAT) | CJ019_03731 ← | hypothetical protein |
| RA | 3,957,060 | A→T | 11.1% | Y197N (TAC→AAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,957,251 | G→A | 45.5% | P133L (CCG→CTG) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,957,351 | G→A | 47.5% | H100Y (CAC→TAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,970,221 | C→T | 7.8% | D98N (GAC→AAC) | CJ019_03750 ← | putative protein |
| RA | 3,986,622 | T→G | 35.0% | D31A (GAT→GCT) | CJ019_03763 ← | hypothetical protein |
| RA | 3,989,732 | T→C | 6.1% | L31P (CTG→CCG) | CJ019_03768 → | hypothetical protein |
| RA | 4,077,164 | T→G | 37.7% | L173R (CTG→CGG) | artJ_2 → | ABC transporter arginine‑binding protein 1 |
| RA | 4,092,063 | A→C | 21.5% | V91G (GTC→GGC) | CJ019_03853 ← | 2‑haloacrylate reductase |
| RA | 4,096,610 | G→A | 7.5% | A94V (GCC→GTC) | CJ019_03858 ← | hypothetical protein |
| RA | 4,135,592 | A→C | 17.0% | N27T (AAC→ACC) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,135,607 | A→C | 47.4% | Q32P (CAG→CCG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,145,586 | A→C | 24.1% | intergenic (+131/+20) | CJ019_03903 → / ← nicP_9 | hypothetical protein/Porin‑like protein NicP |
| RA | 4,229,020 | C→G | 6.2% | D116H (GAC→CAC) | CJ019_03968 ← | hypothetical protein |
| RA | 4,245,154 | T→G | 49.8% | D175A (GAT→GCT) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,258,563 | A→C | 24.4% | D44A (GAC→GCC) | pht2 → | Phthalate 4,5‑dioxygenase oxygenase reductasesubunit |
| JC | 4,263,135 | Δ15 bp | 6.8% | intergenic (‑190/‑357) | pcaK_3 ← / → mrdA_1 | 4‑hydroxybenzoate transporter PcaK/Peptidoglycan D,D‑transpeptidase MrdA |
| RA | 4,291,840 | T→G | 27.9% | intergenic (‑142/‑20) | sdhL ← / → CJ019_04025 | Shikimate dehydrogenase‑like protein/hypothetical protein |
| RA | 4,434,267 | A→C | 31.3% | intergenic (+590/‑259) | dmlR_17 → / → CJ019_04207 | HTH‑type transcriptional regulator DmlR/hypothetical protein |
| RA | 4,440,130 | C→A | 6.7% | Q360H (CAG→CAT) | nicC ← | 6‑hydroxynicotinate 3‑monooxygenase |
| RA | 4,505,789 | G→T | 8.1% | P94Q (CCG→CAG) | lolA ← | Outer‑membrane lipoprotein carrier protein |
| RA | 4,666,745 | T→G | 34.6% | intergenic (‑90/‑131) | lasR ← / → btuB_4 | Transcriptional activator protein LasR/Vitamin B12 transporter BtuB |
| RA | 4,670,287 | C→T | 7.5% | R645Q (CGG→CAG) | adiA ← | Biodegradative arginine decarboxylase |
| RA | 4,749,286 | T→G | 26.8% | S294A (TCG→GCG) | macB → | Macrolide export ATP‑binding/permease proteinMacB |
| RA | 4,789,443 | A→C | 31.1% | V230G (GTG→GGG) | dat ← | Diaminobutyrate‑‑2‑oxoglutarateaminotransferase |
| RA | 4,825,420 | T→A | 7.9% | C35S (TGC→AGC) | CJ019_04521 → | hypothetical protein |
| RA | 4,874,567 | A→C | 35.8% | intergenic (+13/‑174) | CJ019_04568 → / → uacT_1 | hypothetical protein/Uric acid transporter UacT |
| RA | 4,970,678 | G→A | 8.5% | P346L (CCC→CTC) | flgI ← | Flagellar P‑ring protein |
| RA | 4,986,317 | A→T | 9.1% | I150F (ATC→TTC) | bkdA1 → | 2‑oxoisovalerate dehydrogenase subunit alpha |
| RA | 5,023,365 | T→C | 72.2% | S40P (TCT→CCT) | proP_6 → | Proline/betaine transporter |
| RA | 5,055,964 | Δ1 bp | 7.3% | coding (479/762 nt) | CJ019_04749 → | IS630 family transposase ISPpu1 |
| RA | 5,284,713 | T→G | 25.5% | F162C (TTT→TGT) | cmpR_6 → | HTH‑type transcriptional activator CmpR |
| RA | 5,336,288 | G→A | 7.0% | D258N (GAT→AAT) | panC → | Pantothenate synthetase |
| RA | 5,624,908 | C→T | 12.8% | F203F (TTC→TTT) | putA → | Bifunctional protein PutA |
| RA | 5,624,911 | C→T | 12.0% | V204V (GTC→GTT) | putA → | Bifunctional protein PutA |
| RA | 5,624,914 | C→T | 12.2% | N205N (AAC→AAT) | putA → | Bifunctional protein PutA |
| RA | 5,689,816 | A→C | 51.5% | S236R (AGC→CGC) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,757,234 | Δ1 bp | 100% | coding (776/834 nt) | CJ019_05400 → | hypothetical protein |
| RA | 5,818,139 | C→A | 8.9% | L19M (CTG→ATG) | CJ019_05447 → | hypothetical protein |
| JC | 5,924,085 | Δ6 bp | 5.8% | coding (133‑138/1224 nt) | ubiI ← | 2‑octaprenylphenol hydroxylase |
| RA | 5,982,960 | A→T | 11.8% | intergenic (+419/‑270) | kefC_3 → / → CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| RA | 6,036,532 | C→A | 8.9% | Q183K (CAG→AAG) | CJ019_05653 → | hypothetical protein |
| RA | 6,097,340 | C→A | 7.6% | A113D (GCC→GAC) | CJ019_05710 → | hypothetical protein |
| RA | 6,125,178 | T→C | 5.5% | Q60R (CAG→CGG) | copB_2 ← | Copper resistance protein B |
| RA | 6,172,167 | A→T | 8.9% | F249Y (TTC→TAC) | atpA ← | ATP synthase subunit alpha |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87981 | 88060 | 80 | 12 [10] | [10] 13 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 161242 | 161381–161316 | 75–140 | 12 [11] | [11] 12 | [uctC_1] | [uctC_1] |
| * | * | ÷ | KT2440 | 277592 | 277677 | 86 | 12 [11] | [11] 12 | [betT2]–[tauD_2] | [betT2],[tauD_2] |
| * | * | ÷ | KT2440 | 329220 | 329368 | 149 | 17 [10] | [6] 13 | [CJ019_00302] | [CJ019_00302] |
| * | * | ÷ | KT2440 | 517190 | 517387 | 198 | 17 [10] | [11] 12 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | KT2440 | 607275 | 607400 | 126 | 13 [10] | [7] 12 | dxs/ispA | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/Farnesyl diphosphate synthase |
| * | * | ÷ | KT2440 | 641268 | 641354 | 87 | 12 [11] | [11] 12 | [acoR_2] | [acoR_2] |
| * | * | ÷ | KT2440 | 674269 | 674380 | 112 | 13 [11] | [8] 14 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | KT2440 | 789844 | 789951 | 108 | 12 [11] | [11] 12 | [CJ019_00751] | [CJ019_00751] |
| * | * | ÷ | KT2440 | 856905 | 856997 | 93 | 13 [10] | [11] 12 | [hemH]–[uraA] | [hemH],[uraA] |
| * | * | ÷ | KT2440 | 876815 | 876981 | 167 | 12 [11] | [10] 12 | CJ019_00843/malT | putative protein/HTH‑type transcriptional regulator MalT |
| * | * | ÷ | KT2440 | 1000522 | 1000679 | 158 | 14 [11] | [11] 13 | [fecA_1]–[osmV] | [fecA_1],[osmV] |
| * | * | ÷ | KT2440 | 1106836 | 1106965 | 130 | 12 [11] | [11] 12 | [hupB_1]–[rlmF] | [hupB_1],[rlmF] |
| * | * | ÷ | KT2440 | 1107881 | 1108001 | 121 | 12 [11] | [11] 12 | rlmF/valS | Ribosomal RNA large subunit methyltransferase F/Valine‑‑tRNA ligase |
| * | * | ÷ | KT2440 | 1119629 | 1119715 | 87 | 13 [11] | [9] 17 | tdcG_2/gcvP_1 | L‑serine dehydratase TdcG/Glycine dehydrogenase (decarboxylating) |
| * | * | ÷ | KT2440 | 1149276 | 1149475 | 200 | 12 [11] | [10] 12 | [sasA_4] | [sasA_4] |
| * | * | ÷ | KT2440 | 1304745 | 1304852 | 108 | 13 [11] | [10] 14 | CJ019_01223/rapA | putative signaling protein/RNA polymerase‑associated protein RapA |
| * | * | ÷ | KT2440 | 1360587 | 1360999 | 413 | 13 [11] | [9] 12 | [CJ019_01275] | [CJ019_01275] |
| * | * | ÷ | KT2440 | 1376290 | 1376321 | 32 | 12 [10] | [7] 14 | CJ019_01289 | hypothetical protein |
| * | * | ÷ | KT2440 | 1396593 | 1396679 | 87 | 13 [9] | [9] 13 | [mcpU_1] | [mcpU_1] |
| * | * | ÷ | KT2440 | 1411275 | 1411322 | 48 | 12 [11] | [10] 12 | [purC] | [purC] |
| * | * | ÷ | KT2440 | 1457213 | 1457299 | 87 | 12 [9] | [11] 12 | [algL]–[algX] | [algL],[algX] |
| * | * | ÷ | KT2440 | 1492461 | 1492581 | 121 | 12 [6] | [11] 14 | [CJ019_01406] | [CJ019_01406] |
| * | * | ÷ | KT2440 | 1499958 | 1500063 | 106 | 13 [11] | [11] 12 | [sspA] | [sspA] |
| * | * | ÷ | KT2440 | 1696279 | 1696332 | 54 | 13 [11] | [11] 12 | lysS/CJ019_01592 | Lysine‑‑tRNA ligase/hypothetical protein |
| * | * | ÷ | KT2440 | 1697651 | 1697722 | 72 | 12 [10] | [11] 13 | [CJ019_01593] | [CJ019_01593] |
| * | * | ÷ | KT2440 | 1705094 | 1705206 | 113 | 12 [11] | [10] 13 | ppc/adk | Phosphoenolpyruvate carboxylase/Adenylate kinase |
| * | * | ÷ | KT2440 | 1833103 | 1833171 | 69 | 12 [11] | [9] 12 | [resA_1]–[CJ019_01751] | [resA_1],[CJ019_01751] |
| * | * | ÷ | KT2440 | 1835848 | 1835908 | 61 | 12 [10] | [8] 13 | barA | Signal transduction histidine‑protein kinaseBarA |
| * | * | ÷ | KT2440 | 1914571 | 1914655 | 85 | 15 [9] | [11] 12 | [ppsC_1]–[CJ019_01830] | [ppsC_1],[CJ019_01830] |
| * | * | ÷ | KT2440 | 1923425 | 1923524 | 100 | 12 [10] | [11] 12 | [apeB] | [apeB] |
| * | * | ÷ | KT2440 | 1940792 | 1940944 | 153 | 12 [11] | [11] 15 | [CJ019_01857] | [CJ019_01857] |
| * | * | ÷ | KT2440 | 2043583 | 2043728 | 146 | 14 [7] | [10] 13 | smrA/CJ019_01939 | putative DNA endonuclease SmrA/hypothetical protein |
| * | * | ÷ | KT2440 | 2288815 | 2288934 | 120 | 14 [10] | [9] 13 | CJ019_02171/CJ019_02172 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 3046182 | 3046308 | 127 | 12 [11] | [11] 12 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 3069114 | 3069170 | 57 | 12 [10] | [11] 12 | CJ019_02881/CJ019_02882 | hypothetical protein/putative protein |
| * | * | ÷ | KT2440 | 3280251 | 3280364 | 114 | 12 [11] | [11] 12 | [CJ019_03085]–[xthA_2] | [CJ019_03085],[xthA_2] |
| * | * | ÷ | KT2440 | 3459854 | 3459950 | 97 | 12 [10] | [11] 13 | CJ019_03284 | hypothetical protein |
| * | * | ÷ | KT2440 | 4163802 | 4163866 | 65 | 13 [11] | [11] 12 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4332112 | 4332156 | 45 | 13 [11] | [8] 13 | aes/CJ019_04068 | Acetyl esterase/hypothetical protein |
| * | * | ÷ | KT2440 | 4333672 | 4333769 | 98 | 14 [11] | [8] 12 | ribBA_2/potD_2 | Riboflavin biosynthesis protein RibBA/Spermidine/putrescine‑binding periplasmicprotein |
| * | * | ÷ | KT2440 | 4337914 | 4337975 | 62 | 12 [11] | [9] 12 | [btuD_7] | [btuD_7] |
| * | * | ÷ | KT2440 | 4346805 | 4346849 | 45 | 17 [9] | [10] 13 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | KT2440 | 4497380 | 4497487 | 108 | 12 [11] | [11] 14 | [xanP]–[dsrE] | [xanP],[dsrE] |
| * | * | ÷ | KT2440 | 4523610 | 4523710 | 101 | 12 [11] | [10] 15 | [CJ019_04289] | [CJ019_04289] |
| * | * | ÷ | KT2440 | 4734457 | 4734521 | 65 | 13 [10] | [11] 12 | gltA/CJ019_04468 | Citrate synthase/hypothetical protein |
| * | * | ÷ | KT2440 | 4883384 | 4883520 | 137 | 12 [11] | [10] 12 | hyi/glxR | Hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| * | * | ÷ | KT2440 | 4944706 | 4944847 | 142 | 13 [11] | [11] 12 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | KT2440 | 5167045 | 5167090 | 46 | 12 [11] | [6] 16 | fadD_1/fadD_2 | Long‑chain‑fatty‑acid‑‑CoA ligase/Long‑chain‑fatty‑acid‑‑CoA ligase |
| * | * | ÷ | KT2440 | 5188666 | 5188756 | 91 | 12 [10] | [11] 12 | [CJ019_04882]–[pxpC_2] | [CJ019_04882],[pxpC_2] |
| * | * | ÷ | KT2440 | 5193419 | 5193530 | 112 | 12 [11] | [11] 13 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | KT2440 | 5250609 | 5250721 | 113 | 12 [9] | [10] 12 | [CJ019_04947]–[CJ019_04948] | [CJ019_04947],[CJ019_04948] |
| * | * | ÷ | KT2440 | 5433061 | 5433186 | 126 | 13 [11] | [11] 12 | [rluE] | [rluE] |
| * | * | ÷ | KT2440 | 5478914 | 5479038 | 125 | 12 [11] | [11] 12 | [purH] | [purH] |
| * | * | ÷ | KT2440 | 5500300 | 5500503 | 204 | 12 [8] | [11] 12 | [CJ019_05176] | [CJ019_05176] |
| * | * | ÷ | KT2440 | 5646783 | 5646858 | 76 | 20 [9] | [11] 12 | CJ019_05302/CJ019_05303 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 5675179 | 5675302 | 124 | 12 [10] | [11] 12 | CJ019_05328/CJ019_05329 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 5810709 | 5810971 | 263 | 12 [10] | [11] 12 | [pilT] | [pilT] |
| * | * | ÷ | KT2440 | 5896961 | 5897040 | 80 | 12 [10] | [11] 13 | [CJ019_05521] | [CJ019_05521] |
| * | * | ÷ | KT2440 | 5937468 | 5937492 | 25 | 13 [11] | [6] 12 | qorA_2/chaC | Quinone oxidoreductase 1/Glutathione‑specificgamma‑glutamylcyclotransferas e |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 4201049 = | 59 (1.390) | 4 (0.090) | 4/234 | NT | 6.1% | coding (372/6624 nt) | CJ019_03944 | hypothetical protein |
| ? | KT2440 | = 4292766 | 65 (1.530) | coding (130/315 nt) | CJ019_04027 | hypothetical protein | |||||
| * | ? | KT2440 | 4918800 = | 0 (0.000) | 45 (1.090) | 33/228 | NT | 100% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 0 (0.000) | 35 (0.840) | 26/230 | NT | 100% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||