mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 12,483 | G→A | 9.4% | T618T (ACG→ACA) | CJ019_00019 → | hypothetical protein |
| RA | 44,293 | Δ1 bp | 100% | intergenic (+124/‑367) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 86,554 | G→A | 6.9% | Y188Y (TAC→TAT) | limB ← | Limonene 1,2‑monooxygenase |
| RA | 120,975 | Δ1 bp | 100% | intergenic (+272/+100) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 150,743 | T→G | 55.1% | E27A (GAG→GCG) | CJ019_00156 ← | hypothetical protein |
| RA | 169,760 | A→C | 11.4% | intergenic (+724/+2963) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,792 | G→A | 8.9% | intergenic (+756/+2931) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,811 | C→A | 10.5% | intergenic (+775/+2912) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,812 | T→C | 7.5% | intergenic (+776/+2911) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,813 | A→G | 10.4% | intergenic (+777/+2910) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,817 | T→A | 10.4% | intergenic (+781/+2906) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,819 | T→G | 11.5% | intergenic (+783/+2904) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,820 | T→C | 10.6% | intergenic (+784/+2903) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,821 | A→G | 11.4% | intergenic (+785/+2902) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,822 | G→T | 10.0% | intergenic (+786/+2901) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 179,484 | T→C | 100% | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 252,598 | G→A | 6.4% | G362D (GGC→GAC) | CJ019_00227 → | hypothetical protein |
| RA | 315,782 | T→A | 12.6% | Q503L (CAG→CTG) | cntO_1 ← | Metal‑pseudopaline receptor CntO |
| RA | 383,395 | G→A | 8.5% | G207S (GGC→AGC) | soxA_1 → | Sarcosine oxidase subunit alpha |
| RA | 573,463 | C→T | 7.6% | C258C (TGC→TGT) | fdhE → | Protein FdhE |
| RA | 635,862 | G→A | 8.3% | R59C (CGC→TGC) | acoC ← | Dihydrolipoyllysine‑residue acetyltransferasecomponent of acetoin cleaving system |
| RA | 656,905 | A→C | 25.6% | T241P (ACG→CCG) | yfhM → | Alpha‑2‑macroglobulin |
| RA | 759,412 | C→G | 45.7% | intergenic (+21/‑147) | mmuM_1 → / → CJ019_00729 | Homocysteine S‑methyltransferase/L‑methionine gamma‑lyase |
| RA | 759,419 | A→C | 47.7% | intergenic (+28/‑140) | mmuM_1 → / → CJ019_00729 | Homocysteine S‑methyltransferase/L‑methionine gamma‑lyase |
| RA | 1,063,986 | T→G | 27.2% | D151A (GAC→GCC) | CJ019_01001 ← | hypothetical protein |
| RA | 1,118,296 | T→G | 10.7% | T435P (ACC→CCC) | tdcG_2 ← | L‑serine dehydratase TdcG |
| RA | 1,138,494 | T→G | 46.6% | intergenic (‑108/+33) | pigA_1 ← / ← hemR | Heme oxygenase PigA/Hemin receptor |
| RA | 1,342,117 | A→G | 6.2% | intergenic (‑530/+224) | nicP_1 ← / ← CJ019_01258 | Porin‑like protein NicP/hypothetical protein |
| RA | 1,362,136 | C→T | 9.0% | R241W (CGG→TGG) | CJ019_01276 → | hypothetical protein |
| RA | 1,422,128 | G→C | 12.7% | W410S (TGG→TCG) | mqo_2 → | Malate:quinone oxidoreductase |
| RA | 1,625,302 | T→C | 8.3% | S334P (TCC→CCC) | lepA → | Elongation factor 4 |
| RA | 1,670,685 | A→C | 41.8% | intergenic (+22/‑109) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,670,696 | A→C | 44.2% | intergenic (+33/‑98) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,720,951 | T→G | 39.0% | D90A (GAC→GCC) | plsB ← | Glycerol‑3‑phosphate acyltransferase |
| RA | 1,720,958 | T→G | 37.4% | T88P (ACC→CCC) | plsB ← | Glycerol‑3‑phosphate acyltransferase |
| RA | 1,720,970 | A→C | 32.1% | F84V (TTC→GTC) | plsB ← | Glycerol‑3‑phosphate acyltransferase |
| RA | 1,721,870 | A→C | 36.4% | V98G (GTC→GGC) | CJ019_01617 ← | hypothetical protein |
| RA | 1,807,474 | G→A | 100% | G258D (GGC→GAC) | yeiG → | S‑formylglutathione hydrolase YeiG |
| RA | 1,869,832 | G→A | 6.3% | L197L (TTG→TTA) | CJ019_01787 → | hypothetical protein |
| RA | 1,900,316 | A→C | 26.6% | V160G (GTC→GGC) | CJ019_01816 ← | 2‑ketogluconate reductase |
| RA | 1,923,103 | C→T | 7.1% | L15L (TTG→TTA) | CJ019_01837 ← | hypothetical protein |
| RA | 2,031,520 | G→T | 100% | T339T (ACC→ACA) | wecB ← | UDP‑N‑acetylglucosamine 2‑epimerase |
| RA | 2,219,961 | A→T | 8.3% | F166L (TTT→TTA) | CJ019_02103 ← | hypothetical protein |
| RA | 2,246,497 | G→A | 6.3% | S193N (AGC→AAC) | COQ5 → | 2‑methoxy‑6‑polyprenyl‑1,4‑benzoquinolmethylase, mitochondrial |
| RA | 2,264,985 | T→C | 11.6% | intergenic (+136/‑6) | PP_RS08755 → / → PP_RS08755 | tRNA‑Asp/tRNA‑Asp |
| RA | 2,266,996 | T→G | 22.9% | N143T (AAC→ACC) | CJ019_02153 ← | putative HTH‑type transcriptional regulator |
| RA | 2,508,222 | G→A | 5.9% | R74R (CGC→CGT) | phnX_2 ← | Phosphonoacetaldehyde hydrolase |
| RA | 2,662,000 | T→A | 8.5% | H265Q (CAT→CAA) | mmgE → | Citrate/2‑methylcitrate dehydratase |
| RA | 2,744,444 | A→C | 33.6% | N64H (AAC→CAC) | czcC_2 → | Cobalt‑zinc‑cadmium resistance protein CzcC |
| RA | 2,839,289 | C→T | 100% | intergenic (‑117/‑88) | CJ019_02692 ← / → CJ019_02693 | hypothetical protein/hypothetical protein |
| RA | 2,858,207 | A→G | 19.9% | F78S (TTC→TCC) | nicP_5 ← | Porin‑like protein NicP |
| RA | 2,869,602 | T→C | 10.6% | K277R (AAG→AGG) | CJ019_02729 ← | hypothetical protein |
| RA | 2,910,766 | A→C | 20.6% | K2243N (AAA→AAC) | CJ019_02759 → | hypothetical protein |
| RA | 3,002,898 | G→A | 9.7% | L70L (CTG→CTA) | bcsE → | Cyclic di‑GMP binding protein BcsE |
| RA | 3,061,793 | G→A | 100% | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,179,891 | C→T | 9.2% | A150A (GCC→GCT) | actP_2 → | Cation/acetate symporter ActP |
| RA | 3,210,887 | A→C | 41.5% | Q206P (CAG→CCG) | oprJ_2 → | Outer membrane protein OprJ |
| RA | 3,231,966 | T→G | 19.0% | F14V (TTC→GTC) | lgoT_2 → | putative L‑galactonate transporter |
| RA | 3,285,727 | A→C | 52.4% | T652P (ACT→CCT) | tamB → | Translocation and assembly module subunit TamB |
| RA | 3,308,725 | A→C | 33.7% | L164R (CTG→CGG) | CJ019_03110 ← | hypothetical protein |
| RA | 3,449,038 | G→C | 9.3% | intergenic (‑91/+2) | acsA_3 ← / ← eco | Acetyl‑coenzyme A synthetase/Ecotin |
| RA | 3,491,319 | A→C | 43.8% | intergenic (‑681/+40) | CJ019_03306 ← / ← CJ019_03307 | hypothetical protein/hypothetical protein |
| RA | 3,491,323 | T→G | 61.9% | intergenic (‑685/+36) | CJ019_03306 ← / ← CJ019_03307 | hypothetical protein/hypothetical protein |
| RA | 3,653,349 | A→C | 19.7% | V148G (GTG→GGG) | mtnB_2 ← | Methylthioribulose‑1‑phosphate dehydratase |
| RA | 3,761,329 | A→C | 44.3% | E96A (GAG→GCG) | CJ019_03574 → | hypothetical protein |
| RA | 3,850,110 | A→C | 16.3% | F117V (TTC→GTC) | eamB_1 ← | Cysteine/O‑acetylserine efflux protein |
| RA | 3,912,321 | T→G | 20.4% | S820A (TCG→GCG) | mexB_2 → | Multidrug resistance protein MexB |
| RA | 3,919,311 | G→A | 6.4% | S275S (AGC→AGT) | CJ019_03703 ← | hypothetical protein |
| RA | 3,957,351 | G→A | 100% | H100Y (CAC→TAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,969,776 | A→C | 35.9% | L246R (CTG→CGG) | CJ019_03750 ← | putative protein |
| RA | 4,000,955 | A→T | 6.9% | L189Q (CTA→CAA) | ggt_1 ← | Glutathione hydrolase proenzyme |
| RA | 4,029,463 | A→C | 26.5% | D290A (GAC→GCC) | mcpU_3 → | Methyl‑accepting chemotaxis protein McpU |
| RA | 4,030,329 | T→G | 22.9% | F579V (TTT→GTT) | mcpU_3 → | Methyl‑accepting chemotaxis protein McpU |
| RA | 4,079,259 | G→A | 5.9% | A105T (GCC→ACC) | dadA → | D‑amino acid dehydrogenase |
| RA | 4,092,059 | A→C | 19.4% | G92G (GGT→GGG) | CJ019_03853 ← | 2‑haloacrylate reductase |
| RA | 4,092,063 | A→C | 28.1% | V91G (GTC→GGC) | CJ019_03853 ← | 2‑haloacrylate reductase |
| RA | 4,127,172 | T→G | 10.1% | T148P (ACC→CCC) | nrtD_3 ← | Nitrate import ATP‑binding protein NrtD |
| RA | 4,130,129 | T→G | 18.3% | A231A (GCT→GCG) | mtrA → | HTH‑type transcriptional regulator MtrA |
| RA | 4,131,763 | T→G | 27.6% | E23A (GAG→GCG) | CJ019_03889 ← | hypothetical protein |
| RA | 4,135,607 | A→C | 29.7% | Q32P (CAG→CCG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,163,919 | C→T | 7.7% | intergenic (‑382/‑5) | katG ← / → leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| RA | 4,245,145 | A→C | 46.1% | L178R (CTG→CGG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,245,154 | T→G | 38.8% | D175A (GAT→GCT) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,289,845 | T→G | 46.2% | intergenic (+119/‑106) | CJ019_04021 → / → gloA | hypothetical protein/Lactoylglutathione lyase |
| RA | 4,348,580 | G→A | 5.6% | G45G (GGG→GGA) | cysT_1 → | Sulfate transport system permease protein CysT |
| RA | 4,662,146 | T→C | 7.4% | I124T (ATC→ACC) | nuoM → | NADH‑quinone oxidoreductase subunit M |
| RA | 4,851,109 | T→A | 9.1% | V35E (GTG→GAG) | CJ019_04549 → | hypothetical protein |
| RA | 4,874,567 | A→C | 34.1% | intergenic (+13/‑174) | CJ019_04568 → / → uacT_1 | hypothetical protein/Uric acid transporter UacT |
| RA | 4,884,468 | T→A | 19.0% | intergenic (+45/‑194) | glxR → / → ttuD | 2‑hydroxy‑3‑oxopropionate reductase/Putative hydroxypyruvate reductase |
| RA | 4,971,386 | Δ1 bp | 7.7% | coding (329/1110 nt) | flgI ← | Flagellar P‑ring protein |
| RA | 4,971,387 | Δ1 bp | 7.7% | coding (328/1110 nt) | flgI ← | Flagellar P‑ring protein |
| RA | 5,426,158 | Δ1 bp | 5.8% | coding (186/519 nt) | CJ019_05104 → | hypothetical protein |
| RA | 5,441,450 | G→C | 5.7% | E377Q (GAG→CAG) | hemL → | Glutamate‑1‑semialdehyde 2,1‑aminomutase |
| RA | 5,585,616 | T→A | 6.2% | D28V (GAC→GTC) | nudF ← | ADP‑ribose pyrophosphatase |
| RA | 5,685,825 | G→C | 36.5% | P122P (CCG→CCC) | CJ019_05336 → | hypothetical protein |
| RA | 5,689,824 | T→G | 59.6% | R238R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,757,234 | Δ1 bp | 100% | coding (776/834 nt) | CJ019_05400 → | hypothetical protein |
| RA | 5,757,828 | G→A | 13.3% | intergenic (+52/‑27) | envC → / → CJ019_05402 | Murein hydrolase activator EnvC/hypothetical protein |
| RA | 5,830,444 | C→T | 7.3% | P235L (CCC→CTC) | CJ019_05460 → | putative zinc protease |
| RA | 5,846,725 | Δ1 bp | 5.5% | coding (847/1056 nt) | CJ019_05475 ← | hypothetical protein |
| RA | 5,850,615 | T→G | 28.0% | V236G (GTG→GGG) | CJ019_05478 → | putative membrane protein |
| RA | 5,922,380 | C→T | 7.3% | L168L (CTG→CTA) | CJ019_05543 ← | putative binding protein component of ABC iron transporter |
| RA | 6,022,319 | A→G | 6.4% | L326P (CTG→CCG) | puuC_2 ← | NADP/NAD‑dependent aldehyde dehydrogenase PuuC |
| RA | 6,133,865 | C→G | 10.5% | P412R (CCT→CGT) | cusB → | Cation efflux system protein CusB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 213568 | 213676 | 109 | 15 [11] | [13] 14 | [CJ019_00185] | [CJ019_00185] |
| * | * | ÷ | KT2440 | 277598 | 277691 | 94 | 14 [13] | [13] 14 | [betT2]–[tauD_2] | [betT2],[tauD_2] |
| * | * | ÷ | KT2440 | 492236 | 492350 | 115 | 18 [12] | [13] 14 | uvrY/potA_1 | Response regulator UvrY/Spermidine/putrescine import ATP‑binding proteinPotA |
| * | * | ÷ | KT2440 | 517196 | 517290 | 95 | 14 [12] | [13] 14 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | KT2440 | 674232 | 674380 | 149 | 14 [13] | [9] 15 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | KT2440 | 711474 | 711554 | 81 | 14 [13] | [13] 14 | [thiO] | [thiO] |
| * | * | ÷ | KT2440 | 948166 | 948218 | 53 | 14 [12] | [11] 14 | cyoE/alaC | Protoheme IX farnesyltransferase/Glutamate‑pyruvate aminotransferase AlaC |
| * | * | ÷ | KT2440 | 1304770 | 1304854 | 85 | 14 [13] | [13] 14 | CJ019_01223/rapA | putative signaling protein/RNA polymerase‑associated protein RapA |
| * | * | ÷ | KT2440 | 1360610 | 1360989 | 380 | 14 [13] | [12] 14 | [CJ019_01275] | [CJ019_01275] |
| * | * | ÷ | KT2440 | 1396593 | 1396680 | 88 | 15 [13] | [13] 14 | [mcpU_1] | [mcpU_1] |
| * | * | ÷ | KT2440 | 1456049 | 1456100 | 52 | 14 [13] | [13] 15 | patA/algL | Peptidoglycan O‑acetyltransferase/Alginate lyase |
| * | * | ÷ | KT2440 | 1499941 | 1500061 | 121 | 14 [13] | [13] 18 | [sspA] | [sspA] |
| * | * | ÷ | KT2440 | 1585631 | 1585700 | 70 | 14 [13] | [12] 14 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | KT2440 | 1608691 | 1608816 | 126 | 15 [12] | [13] 14 | [CJ019_01513]–[CJ019_01514] | [CJ019_01513],[CJ019_01514] |
| * | * | ÷ | KT2440 | 1697661 | 1697724 | 64 | 14 [13] | [13] 14 | [CJ019_01593] | [CJ019_01593] |
| * | * | ÷ | KT2440 | 1705087 | 1705208 | 122 | 16 [12] | [13] 14 | ppc/adk | Phosphoenolpyruvate carboxylase/Adenylate kinase |
| * | * | ÷ | KT2440 | 1833103 | 1833181 | 79 | 14 [13] | [12] 14 | [resA_1]–[CJ019_01751] | [resA_1],[CJ019_01751] |
| * | * | ÷ | KT2440 | 1914565 | 1914639 | 75 | 14 [10] | [13] 15 | [ppsC_1] | [ppsC_1] |
| * | * | ÷ | KT2440 | 1923414 | 1923538 | 125 | 14 [13] | [13] 16 | [apeB] | [apeB] |
| * | * | ÷ | KT2440 | 1940792 | 1940945 | 154 | 17 [13] | [13] 14 | [CJ019_01857] | [CJ019_01857] |
| * | * | ÷ | KT2440 | 2288822 | 2288934 | 113 | 16 [11] | [12] 17 | CJ019_02171/CJ019_02172 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 2942842 | 2942871 | 30 | 22 [6] | [13] 14 | CJ019_02780/CJ019_02781 | hypothetical protein/8‑oxoguanine deaminase |
| * | * | ÷ | KT2440 | 2944350 | 2944449 | 100 | 32 [13] | [13] 14 | [CJ019_02782] | [CJ019_02782] |
| * | * | ÷ | KT2440 | 3046205 | 3046347 | 143 | 14 [13] | [13] 14 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 3145262 | 3145390 | 129 | 14 [13] | [13] 14 | livH_4 | High‑affinity branched‑chain amino acidtransport system permease protein LivH |
| * | * | ÷ | KT2440 | 3280234 | 3280343 | 110 | 14 [13] | [10] 14 | [CJ019_03085] | [CJ019_03085] |
| * | * | ÷ | KT2440 | 3459849 | 3459932 | 84 | 14 [13] | [11] 15 | CJ019_03284 | hypothetical protein |
| * | * | ÷ | KT2440 | 3769399 | 3769476 | 78 | 14 [12] | [13] 15 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 3944707 | 3944794 | 88 | 17 [12] | [12] 14 | CJ019_03729/CJ019_03730 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 4163797 | 4163866 | 70 | 22 [13] | [13] 15 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4332083 | 4332168 | 86 | 16 [9] | [11] 14 | [CJ019_04068] | [CJ019_04068] |
| * | * | ÷ | KT2440 | 4346796 | 4346849 | 54 | 14 [13] | [12] 14 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | KT2440 | 4497401 | 4497480 | 80 | 14 [13] | [12] 14 | [dsrE] | [dsrE] |
| * | * | ÷ | KT2440 | 4523640 | 4523714 | 75 | 16 [12] | [13] 14 | CJ019_04289/topB | Acetyltransferase/DNA topoisomerase 3 |
| * | * | ÷ | KT2440 | 4734467 | 4734517 | 51 | 14 [13] | [11] 14 | gltA/CJ019_04468 | Citrate synthase/hypothetical protein |
| * | * | ÷ | KT2440 | 4790226 | 4790323 | 98 | 17 [13] | [13] 14 | [qseC_3] | [qseC_3] |
| * | * | ÷ | KT2440 | 4801805 | 4802165 | 361 | 14 [13] | [12] 14 | CJ019_04509/dsbD_2 | hypothetical protein/Thiol:disulfide interchange protein DsbD |
| * | * | ÷ | KT2440 | 4846236 | 4846359 | 124 | 14 [11] | [11] 14 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | KT2440 | 4944736 | 4944877 | 142 | 15 [13] | [13] 15 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | KT2440 | 5167031 | 5167090 | 60 | 16 [13] | [7] 17 | fadD_1/fadD_2 | Long‑chain‑fatty‑acid‑‑CoA ligase/Long‑chain‑fatty‑acid‑‑CoA ligase |
| * | * | ÷ | KT2440 | 5188657 | 5188779 | 123 | 14 [12] | [12] 14 | [CJ019_04882]–[pxpC_2] | [CJ019_04882],[pxpC_2] |
| * | * | ÷ | KT2440 | 5193435 | 5193541 | 107 | 15 [13] | [13] 14 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | KT2440 | 5250610 | 5250717 | 108 | 15 [12] | [10] 16 | [CJ019_04947] | [CJ019_04947] |
| * | * | ÷ | KT2440 | 5500270 | 5500467 | 198 | 14 [13] | [13] 15 | [CJ019_05176] | [CJ019_05176] |
| * | * | ÷ | KT2440 | 5551605 | 5551800 | 196 | 14 [11] | [11] 15 | [purA] | [purA] |
| * | * | ÷ | KT2440 | 5891553 | 5891657 | 105 | 16 [13] | [13] 15 | CJ019_05517/czcA_3 | hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA |
| * | * | ÷ | KT2440 | 5896967 | 5897035 | 69 | 14 [12] | [10] 15 | [CJ019_05521] | [CJ019_05521] |
| * | * | ÷ | KT2440 | 5990989 | 5991070 | 82 | 14 [13] | [11] 14 | [CJ019_05610] | [CJ019_05610] |
| * | * | ÷ | KT2440 | 6074800 | 6074878 | 79 | 14 [12] | [13] 14 | [CJ019_05690] | [CJ019_05690] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 4918800 = | 0 (0.000) | 63 (1.360) | 24/226 | NT | 100% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 0 (0.000) | 47 (1.000) | 33/228 | NT | 100% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||