mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,293 | Δ1 bp | 100% | intergenic (+124/‑367) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 96,480 | T→G | 41.2% | intergenic (+121/‑72) | cynT → / → CJ019_00104 | Carbonic anhydrase 1/hypothetical protein |
| RA | 120,975 | Δ1 bp | 100% | intergenic (+272/+100) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 169,760 | A→C | 5.7% | intergenic (+724/+2963) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,792 | G→A | 5.5% | intergenic (+756/+2931) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 179,484 | T→C | 100% | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 189,506 | T→C | 15.2% | T1455T (ACT→ACC) | CJ019_00185 → | hypothetical protein |
| RA | 362,975 | G→C | 6.3% | intergenic (+27/‑49) | CJ019_00336 → / → CJ019_00337 | hypothetical protein/hypothetical protein |
| RA | 382,484 | T→G | 39.9% | S14A (TCC→GCC) | soxD → | Sarcosine oxidase subunit delta |
| RA | 399,292 | A→C | 34.9% | intergenic (‑186/+122) | CJ019_00365 ← / ← aceF | hypothetical protein/Dihydrolipoyllysine‑residue acetyltransferasecomponent of pyruvate dehydrogenase complex |
| RA | 399,304 | T→G | 37.2% | intergenic (‑198/+110) | CJ019_00365 ← / ← aceF | hypothetical protein/Dihydrolipoyllysine‑residue acetyltransferasecomponent of pyruvate dehydrogenase complex |
| RA | 444,535 | A→C | 23.5% | L130V (TTG→GTG) | hdfR_1 ← | HTH‑type transcriptional regulator HdfR |
| RA | 477,777 | A→T | 6.8% | A109A (GCT→GCA) | glpE ← | Thiosulfate sulfurtransferase GlpE |
| RA | 482,474 | A→C | 33.6% | V67G (GTG→GGG) | surA_1 ← | Chaperone SurA |
| RA | 484,863 | C→T | 8.2% | R203H (CGT→CAT) | lptD ← | LPS‑assembly protein LptD |
| RA | 603,170 | G→A | 8.5% | H214H (CAC→CAT) | btuB_1 ← | Vitamin B12 transporter BtuB |
| RA | 634,781 | Δ1 bp | 7.8% | coding (121/1089 nt) | ydjJ ← | putative zinc‑type alcohol dehydrogenase‑likeprotein YdjJ |
| RA | 655,074 | C→A | 9.3% | D311Y (GAC→TAC) | dinF ← | DNA damage‑inducible protein F |
| RA | 699,520 | Δ1 bp | 6.2% | coding (1947/2301 nt) | yebT → | Intermembrane transport protein YebT |
| RA | 813,275 | C→T | 6.9% | G235G (GGC→GGT) | ada → | Bifunctional transcriptional activator/DNArepair enzyme Ada |
| RA | 868,338 | A→C | 56.0% | intergenic (+27/+19) | loiP → / ← mneA | Metalloprotease LoiP/Putative manganese exporter |
| RA | 990,702 | T→A | 18.0% | intergenic (‑54/+175) | CJ019_00935 ← / ← bfrD | hypothetical protein/putative TonB‑dependent receptor BfrD |
| RA | 1,212,957 | A→T | 7.3% | L17Q (CTG→CAG) | ydgC ← | Inner membrane protein YdgC |
| RA | 1,269,009 | C→T | 8.1% | intergenic (‑146/‑61) | CJ019_01190 ← / → CJ019_01191 | hypothetical protein/hypothetical protein |
| RA | 1,313,950 | T→G | 42.8% | R612R (AGG→CGG) | CJ019_01235 ← | hypothetical protein |
| RA | 1,357,456 | C→A | 8.6% | L366M (CTG→ATG) | dctA2_1 → | C4‑dicarboxylate transport protein 2 |
| RA | 1,388,322 | T→G | 36.8% | L336V (TTG→GTG) | ruvB_1 → | Holliday junction ATP‑dependent DNA helicaseRuvB |
| RA | 1,508,681 | T→G | 18.1% | V187G (GTG→GGG) | ftsI → | Peptidoglycan D,D‑transpeptidase FtsI |
| RA | 1,525,921 | C→T | 6.1% | T292T (ACC→ACT) | secA → | Protein translocase subunit SecA |
| RA | 1,528,308 | A→C | 38.4% | P87P (CCA→CCC) | argJ → | Arginine biosynthesis bifunctional protein ArgJ |
| RA | 1,593,255 | A→G | 6.7% | S328P (TCC→CCC) | CJ019_01499 ← | Beta‑xylosidase |
| RA | 1,628,470 | A→G | 8.0% | E221E (GAA→GAG) | era → | GTPase Era |
| RA | 1,630,540 | A→C | 36.1% | L419R (CTG→CGG) | czcS ← | Sensor protein CzcS |
| RA | 1,670,690 | A→C | 33.2% | intergenic (+27/‑104) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,699,833 | T→C | 7.9% | F281S (TTC→TCC) | CJ019_01595 → | hypothetical protein |
| RA | 1,744,031 | G→C | 36.8% | A92P (GCC→CCC) | CJ019_01649 → | hypothetical protein |
| RA | 1,805,331 | C→T | 100% | R48H (CGC→CAC) | dmlR_4 ← | HTH‑type transcriptional regulator DmlR |
| RA | 2,134,732 | T→G | 24.1% | L471V (TTG→GTG) | comEC → | ComE operon protein 3 |
| RA | 2,138,813 | C→T | 6.3% | A37V (GCT→GTT) | CJ019_02027 → | Putative low molecular weight protein‑tyrosine‑phosphatase |
| RA | 2,145,263 | A→G | 7.0% | E297G (GAA→GGA) | rluC → | Ribosomal large subunit pseudouridine synthaseC |
| RA | 2,341,932 | C→T | 9.7% | A361V (GCG→GTG) | bepE_2 → | Efflux pump membrane transporter BepE |
| RA | 2,371,171 | G→A | 8.2% | R251H (CGC→CAC) | zntB → | Zinc transport protein ZntB |
| RA | 2,488,613 | C→G | 6.6% | R101P (CGC→CCC) | CJ019_02346 ← | hypothetical protein |
| RA | 2,503,742 | T→G | 31.0% | Q349P (CAG→CCG) | copA_2 ← | Copper resistance protein A |
| RA | 2,529,790 | A→T | 5.9% | V769E (GTG→GAG) | mrpA ← | Na( )/H( ) antiporter subunit A |
| RA | 2,569,872 | A→C | 27.8% | L518R (CTG→CGG) | acoR_3 ← | Acetoin catabolism regulatory protein |
| RA | 2,571,359 | G→A | 5.5% | H22H (CAC→CAT) | acoR_3 ← | Acetoin catabolism regulatory protein |
| RA | 2,607,430 | G→T | 5.8% | Q1104H (CAG→CAT) | CJ019_02463 → | hypothetical protein |
| RA | 2,671,714 | A→G | 9.7% | D333G (GAC→GGC) | sasA_7 → | Adaptive‑response sensory‑kinase SasA |
| RA | 2,721,707 | C→T | 31.8% | S126S (TCC→TCT) | gcvA_7 → | Glycine cleavage system transcriptionalactivator |
| RA | 2,911,037 | C→T | 8.7% | Q2334* (CAG→TAG) | CJ019_02759 → | hypothetical protein |
| RA | 3,039,492 | Δ1 bp | 5.7% | coding (68/786 nt) | pstB3 → | Phosphate import ATP‑binding protein PstB 3 |
| RA | 3,061,793 | G→A | 100% | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,202,757 | A→T | 23.4% | V308V (GTA→GTT) | hcf136_2 → | Ycf48‑like protein |
| RA | 3,237,345 | A→C | 35.1% | intergenic (+76/+25) | dinG_3 → / ← CJ019_03036 | 3'‑5' exonuclease DinG/hypothetical protein |
| RA | 3,308,718 | A→C | 36.3% | R166R (CGT→CGG) | CJ019_03110 ← | hypothetical protein |
| RA | 3,491,323 | T→G | 47.1% | intergenic (‑685/+36) | CJ019_03306 ← / ← CJ019_03307 | hypothetical protein/hypothetical protein |
| RA | 3,568,762 | A→G | 6.6% | M262T (ATG→ACG) | uspE_2 ← | Universal stress protein E |
| RA | 3,599,230 | A→G | 6.3% | L197L (TTG→CTG) | xerC_4 ← | Tyrosine recombinase XerC |
| RA | 3,712,756 | T→C | 100% | intergenic (‑299/‑48) | paaF_1 ← / → yrdA_3 | 2,3‑dehydroadipyl‑CoA hydratase/Protein YrdA |
| RA | 3,722,166 | G→A | 5.8% | V13I (GTA→ATA) | CJ019_03540 → | hypothetical protein |
| RA | 3,763,787 | A→C | 28.2% | E44A (GAG→GCG) | CJ019_03576 → | hypothetical protein |
| RA | 3,763,865 | A→C | 18.6% | K70T (AAG→ACG) | CJ019_03576 → | hypothetical protein |
| RA | 3,947,782 | A→C | 29.0% | L129R (CTG→CGG) | CJ019_03732 ← | hypothetical protein |
| RA | 3,956,826 | G→C | 100% | H275D (CAT→GAT) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,989,982 | A→C | 39.1% | intergenic (+15/+30) | CJ019_03768 → / ← CJ019_03769 | hypothetical protein/hypothetical protein |
| RA | 4,029,445 | A→C | 17.9% | Q284P (CAG→CCG) | mcpU_3 → | Methyl‑accepting chemotaxis protein McpU |
| RA | 4,042,017 | A→C | 24.4% | D308A (GAC→GCC) | quiA → | Quinate/shikimate dehydrogenase (quinone) |
| RA | 4,077,164 | T→G | 35.6% | L173R (CTG→CGG) | artJ_2 → | ABC transporter arginine‑binding protein 1 |
| RA | 4,112,358 | T→G | 21.7% | V468G (GTC→GGC) | iorB_2 → | Isoquinoline 1‑oxidoreductase subunit beta |
| RA | 4,135,607 | A→C | 49.6% | Q32P (CAG→CCG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,151,360 | A→C | 15.2% | V55G (GTG→GGG) | cmpR_5 ← | HTH‑type transcriptional activator CmpR |
| RA | 4,187,960 | C→T | 5.2% | intergenic (‑239/+249) | CJ019_03937 ← / ← CJ019_03938 | hypothetical protein/hypothetical protein |
| RA | 4,213,235 | G→A | 8.9% | intergenic (‑279/‑94) | CJ019_03953 ← / → CJ019_03954 | hypothetical protein/hypothetical protein |
| RA | 4,245,134 | A→C | 29.0% | L182V (TTG→GTG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,245,145 | A→C | 62.5% | L178R (CTG→CGG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,245,154 | T→G | 40.1% | D175A (GAT→GCT) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,291,840 | T→G | 30.4% | intergenic (‑142/‑20) | sdhL ← / → CJ019_04025 | Shikimate dehydrogenase‑like protein/hypothetical protein |
| RA | 4,343,972 | T→G | 14.7% | N258T (AAC→ACC) | tsdA ← | Thiosulfate dehydrogenase |
| RA | 4,546,287 | T→C | 6.0% | intergenic (‑34/+64) | rutR_2 ← / ← CJ019_04309 | HTH‑type transcriptional regulator RutR/hypothetical protein |
| RA | 4,647,997 | C→T | 7.1% | G276G (GGC→GGT) | aceA → | Isocitrate lyase |
| RA | 4,690,862 | T→G | 40.6% | L281R (CTG→CGG) | yhaJ_2 → | HTH‑type transcriptional regulator YhaJ |
| RA | 4,744,948 | T→A | 5.8% | I291F (ATC→TTC) | proP_5 ← | Proline/betaine transporter |
| RA | 4,749,309 | C→G | 24.4% | V301V (GTC→GTG) | macB → | Macrolide export ATP‑binding/permease proteinMacB |
| RA | 4,760,878 | G→C | 9.2% | Q628H (CAG→CAC) | fpvA_3 → | Ferripyoverdine receptor |
| RA | 4,789,443 | A→C | 29.0% | V230G (GTG→GGG) | dat ← | Diaminobutyrate‑‑2‑oxoglutarateaminotransferase |
| RA | 4,817,421 | A→C | 27.9% | L2531R (CTG→CGG) | lgrB_2 ← | Linear gramicidin synthase subunit B |
| RA | 4,893,888 | A→C | 20.9% | intergenic (+26/‑472) | lrpC → / → pucI_2 | HTH‑type transcriptional regulator LrpC/putative allantoin permease |
| RA | 4,927,692 | A→C | 50.8% | W194G (TGG→GGG) | srp54 ← | Signal recognition particle 54 kDa protein |
| RA | 4,959,063 | G→A | 100% | Q40* (CAG→TAG) | norR_4 ← | Anaerobic nitric oxide reductase transcriptionregulator NorR |
| RA | 5,096,964 | G→C | 36.8% | intergenic (+70/‑120) | CJ019_04792 → / → CJ019_04793 | Putative pterin‑4‑alpha‑carbinolaminedehydratase/hypothetical protein |
| RA | 5,122,692 | A→C | 29.2% | L80R (CTG→CGG) | slyA_2 ← | Transcriptional regulator SlyA |
| RA | 5,255,631 | A→G | 8.6% | intergenic (‑73/‑23) | metE ← / → CJ019_04952 | 5‑methyltetrahydropteroyltriglutamate‑‑homocystei ne methyltransferase/hypothetical protein |
| RA | 5,267,269 | A→C | 30.9% | D197A (GAC→GCC) | rlmG → | Ribosomal RNA large subunit methyltransferase G |
| RA | 5,358,311 | T→G | 23.8% | H50P (CAC→CCC) | folP ← | Dihydropteroate synthase |
| RA | 5,546,108 | T→G | 20.4% | V504G (GTG→GGG) | CJ019_05222 → | hypothetical protein |
| RA | 5,689,790 | T→G | 49.0% | V227G (GTG→GGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,689,794 | T→G | 48.7% | R228R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,689,816 | A→C | 69.8% | S236R (AGC→CGC) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,757,234 | Δ1 bp | 100% | coding (776/834 nt) | CJ019_05400 → | hypothetical protein |
| RA | 5,809,389 | C→A | 45.6% | intergenic (+38/+53) | ftsN → / ← CJ019_05436 | Cell division protein FtsN/hypothetical protein |
| RA | 5,829,038 | C→T | 9.7% | P494L (CCG→CTG) | CJ019_05458 → | hypothetical protein |
| RA | 5,844,716 | A→C | 22.9% | E529A (GAG→GCG) | ilvD → | Dihydroxy‑acid dehydratase |
| RA | 5,947,570 | T→G | 15.6% | L169R (CTG→CGG) Q423P (CAG→CCG) |
CJ019_05568 → CJ019_05569 ← |
hypothetical protein hypothetical protein |
| RA | 5,975,241 | T→G | 43.3% | L684R (CTG→CGG) | sasA_19 → | Adaptive‑response sensory‑kinase SasA |
| RA | 5,975,263 | A→C | 34.0% | P691P (CCA→CCC) | sasA_19 → | Adaptive‑response sensory‑kinase SasA |
| RA | 5,975,297 | A→C | 19.5% | S703R (AGC→CGC) | sasA_19 → | Adaptive‑response sensory‑kinase SasA |
| RA | 6,005,873 | C→T | 7.4% | A297V (GCG→GTG) | rep_2 → | ATP‑dependent DNA helicase Rep |
| RA | 6,021,514 | T→G | 33.9% | S60R (AGC→CGC) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,021,519 | A→C | 49.2% | L58R (CTG→CGG) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,048,049 | T→A | 6.5% | G186G (GGT→GGA) | tolQ_3 → | Tol‑Pal system protein TolQ |
| RA | 6,073,133 | A→T | 5.9% | intergenic (‑73/‑289) | abaF_2 ← / → CJ019_05688 | Fosfomycin resistance protein AbaF/putative acyl‑CoA thioester hydrolase |
| RA | 6,139,542 | T→G | 16.9% | N2T (AAC→ACC) | CJ019_05747 ← | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87996 | 88060 | 65 | 15 [14] | [14] 21 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 161217 | 161368–161317 | 101–152 | 17 [14] | [14] 16 | [uctC_1] | [uctC_1] |
| * | * | ÷ | KT2440 | 277598 | 277669 | 72 | 15 [14] | [14] 15 | [betT2]–[tauD_2] | [betT2],[tauD_2] |
| * | * | ÷ | KT2440 | 346103 | 346210 | 108 | 16 [13] | [14] 16 | [btuD_1] | [btuD_1] |
| * | * | ÷ | KT2440 | 517190 | 517335 | 146 | 19 [10] | [14] 16 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | KT2440 | 661101 | 661204 | 104 | 16 [14] | [14] 15 | yfhM/CJ019_00619 | Alpha‑2‑macroglobulin/hypothetical protein |
| * | * | ÷ | KT2440 | 674266 | 674390 | 125 | 15 [14] | [14] 15 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | KT2440 | 711463 | 711556 | 94 | 16 [14] | [14] 17 | [thiO] | [thiO] |
| * | * | ÷ | KT2440 | 789825 | 789954 | 130 | 16 [14] | [13] 15 | [CJ019_00751] | [CJ019_00751] |
| * | * | ÷ | KT2440 | 860948 | 861076 | 129 | 22 [14] | [10] 15 | [CJ019_00824] | [CJ019_00824] |
| * | * | ÷ | KT2440 | 1351811 | 1351917 | 107 | 15 [13] | [14] 15 | entD | Enterobactin synthase component D |
| * | * | ÷ | KT2440 | 1396579 | 1396677 | 99 | 15 [14] | [14] 15 | [CJ019_01313]–[mcpU_1] | [CJ019_01313],[mcpU_1] |
| * | * | ÷ | KT2440 | 1457227 | 1457284 | 58 | 15 [9] | [13] 15 | [algX] | [algX] |
| * | * | ÷ | KT2440 | 1480084 | 1480240 | 157 | 18 [14] | [14] 15 | [degS] | [degS] |
| * | * | ÷ | KT2440 | 1492461 | 1492587 | 127 | 16 [11] | [14] 15 | [CJ019_01406] | [CJ019_01406] |
| * | * | ÷ | KT2440 | 1585616 | 1585700 | 85 | 15 [14] | [14] 16 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | KT2440 | 1697661 | 1697728 | 68 | 17 [14] | [14] 15 | [CJ019_01593] | [CJ019_01593] |
| * | * | ÷ | KT2440 | 1833079 | 1833194 | 116 | 15 [14] | [13] 16 | [resA_1]–[CJ019_01751] | [resA_1],[CJ019_01751] |
| * | * | ÷ | KT2440 | 1835810 | 1835921 | 112 | 16 [14] | [14] 16 | barA | Signal transduction histidine‑protein kinaseBarA |
| * | * | ÷ | KT2440 | 1923404 | 1923513 | 110 | 16 [13] | [14] 16 | [apeB] | [apeB] |
| * | * | ÷ | KT2440 | 2234310 | 2234454 | 145 | 15 [14] | [14] 15 | [gltX] | [gltX] |
| * | * | ÷ | KT2440 | 2288824 | 2288922 | 99 | 15 [14] | [6] 15 | CJ019_02171/CJ019_02172 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 2660996 | 2661173 | 178 | 15 [14] | [14] 15 | [prpF] | [prpF] |
| * | * | ÷ | KT2440 | 2830107 | 2830287 | 181 | 15 [13] | [12] 15 | gabD1/namA_3 | Succinate‑semialdehyde dehydrogenase [NADP( )]1/NADPH dehydrogenase |
| * | * | ÷ | KT2440 | 3046190 | 3046338 | 149 | 15 [10] | [14] 15 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 3459859 | 3459932 | 74 | 15 [14] | [12] 15 | CJ019_03284 | hypothetical protein |
| * | * | ÷ | KT2440 | 3769400 | 3769474 | 75 | 17 [12] | [13] 15 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 3839285 | 3839419 | 135 | 15 [13] | [12] 15 | [argP_2] | [argP_2] |
| * | * | ÷ | KT2440 | 3944694 | 3944814 | 121 | 16 [13] | [14] 15 | CJ019_03729/CJ019_03730 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 4163799 | 4163871 | 73 | 16 [14] | [14] 16 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4332104 | 4332161 | 58 | 15 [14] | [12] 15 | aes/CJ019_04068 | Acetyl esterase/hypothetical protein |
| * | * | ÷ | KT2440 | 4333686 | 4333773 | 88 | 18 [13] | [14] 16 | ribBA_2/potD_2 | Riboflavin biosynthesis protein RibBA/Spermidine/putrescine‑binding periplasmicprotein |
| * | * | ÷ | KT2440 | 4523639 | 4523707 | 69 | 15 [14] | [13] 17 | [CJ019_04289] | [CJ019_04289] |
| * | * | ÷ | KT2440 | 4734445 | 4734513 | 69 | 16 [14] | [13] 15 | gltA/CJ019_04468 | Citrate synthase/hypothetical protein |
| * | * | ÷ | KT2440 | 4790231 | 4790302 | 72 | 15 [14] | [14] 15 | dat/qseC_3 | Diaminobutyrate‑‑2‑oxoglutarateaminotransferase/Sensor protein QseC |
| * | * | ÷ | KT2440 | 4801765 | 4802143 | 379 | 15 [12] | [14] 15 | CJ019_04509/dsbD_2 | hypothetical protein/Thiol:disulfide interchange protein DsbD |
| * | * | ÷ | KT2440 | 4944744 | 4944839 | 96 | 15 [14] | [13] 17 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | KT2440 | 5193421 | 5193546 | 126 | 15 [14] | [14] 15 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | KT2440 | 5453344 | 5453464 | 121 | 15 [12] | [14] 25 | [lptE]–[holA] | [lptE],[holA] |
| * | * | ÷ | KT2440 | 5500276 | 5500472 | 197 | 15 [14] | [14] 15 | [CJ019_05176] | [CJ019_05176] |
| * | * | ÷ | KT2440 | 5646783 | 5646868 | 86 | 19 [14] | [14] 16 | CJ019_05302/CJ019_05303 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 5891553 | 5891655 | 103 | 16 [12] | [13] 15 | CJ019_05517/czcA_3 | hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA |
| * | * | ÷ | KT2440 | 5896971 | 5897040 | 70 | 15 [13] | [13] 19 | [CJ019_05521] | [CJ019_05521] |
| * | * | ÷ | KT2440 | 5914023 | 5914094 | 72 | 15 [14] | [12] 15 | CJ019_05537 | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 4918800 = | 0 (0.000) | 59 (1.150) | 27/228 | NT | 100% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 0 (0.000) | 47 (0.910) | 28/230 | NT | 100% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||